bsbit

bsbit is an ultrafast, memory-efficient toolkit for bisulfite-sequencing alignment, methylation and SNP calling, and cohort-matrix construction.

Get started

• Check the supported platforms and build bsbit with the installation guide.
• Find common indexing, alignment, calling, and matrix commands in the quick start.
• Choose the stages and inputs for your analysis with the workflow guide.
• Look up commands, options, and defaults in the CLI reference.

Reference

• Input data
• File formats
• Outputs
• Troubleshoot

Citation

If you use bsbit in your research, please cite:

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