filter countData by gene expression, perform cpm and log2(cpm+1) transformation
Source:R/ngs_rnaseq.R
filter_calcpm_dge.Rdfilter countData by gene expression, perform cpm and log2(cpm+1) transformation
Arguments
- count_df
a data.frame of count data, rows are genes and columns are samples
- group
a vector of group information, default is NULL, every sample is in the same group
- min_count
minimum count for a gene to be kept, default is 10
- min_prop
minimum proportion of samples in the smallest group to have the minimum count, default is 0.1
Value
a list of edgeR objects, including dge_count, dge_cpm, dge_keep, dge_keep_cpm, dge_keep_cpm_log
Examples
filter_calcpm_dge(count_df)
#> Warning: All samples appear to belong to the same group.
#> $dge_count
#> An object of class "DGEList"
#> $counts
#> sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7 sample_8
#> gene_1 110 107 90 99 112 85 91 109
#> gene_2 104 111 98 109 109 122 121 71
#> gene_3 102 111 90 109 118 114 101 92
#> gene_4 88 93 103 99 96 77 98 99
#> gene_5 111 105 92 103 109 104 95 110
#> sample_9 sample_10 sample_11 sample_12 sample_13 sample_14 sample_15
#> gene_1 101 106 105 114 78 94 96
#> gene_2 108 108 93 83 125 97 116
#> gene_3 100 92 106 111 83 115 103
#> gene_4 83 94 94 108 90 105 100
#> gene_5 91 104 90 99 97 111 81
#> sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1 105 91 108 88 109
#> gene_2 104 102 106 83 115
#> gene_3 80 102 98 85 119
#> gene_4 98 116 91 89 98
#> gene_5 103 113 102 109 107
#> 95 more rows ...
#>
#> $samples
#> group lib.size norm.factors
#> sample_1 1 10135 1
#> sample_2 1 10135 1
#> sample_3 1 10129 1
#> sample_4 1 9857 1
#> sample_5 1 10056 1
#> 15 more rows ...
#>
#>
#> $dge_cpm
#> sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7
#> gene_1 10853.478 10557.474 8885.379 10043.624 11137.629 8396.720 9117.323
#> gene_2 10261.470 10952.146 9675.190 11058.131 10839.300 12051.763 12123.034
#> gene_3 10064.134 10952.146 8885.379 11058.131 11734.288 11261.484 10119.227
#> gene_4 8682.782 9176.122 10168.822 10043.624 9546.539 7606.441 9818.655
#> gene_5 10952.146 10360.138 9082.831 10449.427 10839.300 10273.634 9518.084
#> gene_6 9176.122 8584.114 11353.539 9130.567 12132.060 9483.355 9217.513
#> gene_7 9373.458 9768.130 7898.114 9434.919 9248.210 10866.344 10519.988
#> gene_8 8584.114 10754.810 9576.464 9942.173 10143.198 9878.495 9918.846
#> gene_9 8288.111 9373.458 10168.822 9232.018 9944.312 10076.064 8315.800
#> gene_10 10853.478 8978.786 9379.011 11058.131 10043.755 9088.215 10119.227
#> gene_11 10162.802 8584.114 10859.907 10449.427 10043.755 9680.925 10720.369
#> gene_12 8682.782 9669.462 8293.020 9333.469 8850.438 10372.419 9417.894
#> gene_13 9472.126 9077.454 8984.105 9637.821 10441.527 9878.495 8616.371
#> gene_14 8584.114 10458.806 10958.634 9536.370 8651.551 10471.204 9618.275
#> gene_15 8978.786 9274.790 8786.652 8217.510 10441.527 9483.355 10419.798
#> gene_16 10064.134 9768.130 8490.473 8826.215 12132.060 10076.064 12323.414
#> gene_17 9669.462 9176.122 11254.813 10753.779 10242.641 9779.710 9417.894
#> gene_18 10656.142 9274.790 12735.709 9942.173 10143.198 8989.430 10519.988
#> gene_19 12136.162 9274.790 9181.558 9434.919 10839.300 11557.839 8215.610
#> gene_20 10754.810 9965.466 9477.737 9333.469 9944.312 9285.785 9618.275
#> gene_21 11248.150 7893.439 10465.001 10145.075 10242.641 10372.419 9317.704
#> gene_22 9669.462 11050.814 8490.473 11362.484 10640.414 8693.075 8315.800
#> gene_23 11544.154 10162.802 8293.020 11666.836 9944.312 9384.570 10219.417
#> gene_24 9077.454 11149.482 8293.020 9739.272 9347.653 8594.290 9417.894
#> gene_25 8386.778 10064.134 9872.643 9536.370 9248.210 9187.000 8816.752
#> gene_26 10261.470 9768.130 10465.001 10145.075 9347.653 8989.430 10319.607
#> gene_27 11544.154 9866.798 9576.464 9232.018 10839.300 9779.710 9618.275
#> gene_28 8978.786 10162.802 9773.916 10652.328 10342.084 10372.419 8315.800
#> gene_29 10853.478 10162.802 10563.728 12579.892 11634.845 8791.860 11421.701
#> gene_30 8978.786 9866.798 9773.916 9942.173 12728.719 9779.710 10519.988
#> gene_31 9472.126 10656.142 10859.907 9333.469 10242.641 10076.064 11822.463
#> gene_32 10656.142 11346.818 11156.086 9130.567 11237.072 10767.559 10820.559
#> gene_33 8880.118 9472.126 9872.643 12072.639 9148.767 9977.279 10319.607
#> gene_34 10360.138 8288.111 9280.284 9942.173 10043.755 10569.989 10419.798
#> gene_35 9866.798 10557.474 10662.454 10956.681 10441.527 8791.860 10720.369
#> gene_36 8781.450 11149.482 9181.558 11261.033 8850.438 8791.860 11020.940
#> gene_37 10162.802 10162.802 9773.916 9536.370 10242.641 8791.860 9317.704
#> gene_38 10853.478 11445.486 9379.011 10347.976 10640.414 10767.559 10920.749
#> gene_39 12136.162 9373.458 12735.709 9840.722 9049.324 9187.000 9117.323
#> gene_40 11248.150 10557.474 9477.737 11261.033 9944.312 9187.000 10219.417
#> gene_41 9274.790 8090.775 7996.841 9942.173 9447.096 8890.645 9718.465
#> gene_42 11840.158 10360.138 11945.898 8724.764 9347.653 9483.355 9818.655
#> gene_43 7400.099 10754.810 10070.096 8623.313 9645.982 9187.000 9417.894
#> gene_44 9472.126 8584.114 9675.190 9029.116 9844.869 10767.559 9217.513
#> gene_45 9472.126 9669.462 7996.841 9333.469 10043.755 9088.215 9518.084
#> gene_46 8288.111 10064.134 8885.379 10956.681 10839.300 10076.064 10419.798
#> gene_47 11149.482 9472.126 10267.549 9434.919 10143.198 10471.204 10720.369
#> gene_48 11149.482 10458.806 9379.011 10043.624 10839.300 8495.505 10920.749
#> gene_49 10064.134 11050.814 9773.916 9739.272 12927.605 9977.279 9518.084
#> gene_50 9768.130 9965.466 10267.549 11666.836 11535.402 9878.495 10119.227
#> gene_51 9176.122 9274.790 10465.001 10246.525 9645.982 8791.860 10119.227
#> gene_52 10853.478 11248.150 9773.916 10347.976 9546.539 8693.075 11822.463
#> gene_53 10360.138 10754.810 10859.907 10956.681 10342.084 10471.204 8215.610
#> gene_54 9373.458 10458.806 9773.916 12681.343 9447.096 10767.559 8816.752
#> gene_55 10458.806 8090.775 8490.473 8014.609 10739.857 9878.495 10820.559
#> gene_56 11346.818 9866.798 10958.634 8217.510 8949.881 8297.935 10319.607
#> gene_57 10458.806 10458.806 8687.926 10246.525 9546.539 11261.484 11421.701
#> gene_58 9965.466 9965.466 10267.549 9232.018 10739.857 10767.559 10119.227
#> gene_59 9768.130 10952.146 11550.992 9434.919 10143.198 9187.000 10419.798
#> gene_60 11840.158 12925.506 10070.096 10652.328 11734.288 10668.774 9718.465
#> gene_61 10853.478 11149.482 10958.634 8521.863 9546.539 11952.978 8816.752
#> gene_62 8781.450 8781.450 8885.379 10550.878 10839.300 9977.279 9618.275
#> gene_63 9472.126 10458.806 10168.822 9232.018 10839.300 10866.344 9618.275
#> gene_64 9669.462 8978.786 10070.096 10246.525 11137.629 9088.215 8315.800
#> gene_65 9373.458 10557.474 10563.728 9637.821 8750.994 9878.495 10620.178
#> gene_66 9965.466 12136.162 12242.077 11463.934 10441.527 10174.849 8516.181
#> gene_67 9274.790 9077.454 10070.096 9232.018 10640.414 10076.064 11421.701
#> gene_68 10162.802 10162.802 9675.190 11463.934 8949.881 11261.484 10720.369
#> gene_69 11544.154 10557.474 10662.454 11159.582 8750.994 9977.279 12423.605
#> gene_70 8978.786 9965.466 10267.549 10449.427 9844.869 10174.849 10019.036
#> gene_71 9472.126 11741.490 9280.284 10043.624 10739.857 12743.258 9918.846
#> gene_72 10853.478 9669.462 9181.558 8014.609 8949.881 10372.419 11622.082
#> gene_73 9965.466 9866.798 12834.436 10043.624 9447.096 11360.269 11822.463
#> gene_74 9274.790 9866.798 9872.643 10043.624 8353.222 10174.849 10019.036
#> gene_75 10853.478 10458.806 11452.266 10652.328 8949.881 10965.129 10920.749
#> gene_76 11248.150 8880.118 10761.181 10449.427 10739.857 10273.634 10419.798
#> gene_77 9768.130 9768.130 12538.256 9130.567 9645.982 10273.634 10319.607
#> gene_78 10162.802 10754.810 9280.284 10956.681 9944.312 10668.774 10119.227
#> gene_79 9768.130 9176.122 10070.096 9942.173 8651.551 9878.495 9918.846
#> gene_80 10853.478 9866.798 9872.643 9029.116 9745.426 10866.344 8215.610
#> gene_81 8781.450 9274.790 12044.624 9739.272 9049.324 8989.430 8916.942
#> gene_82 11840.158 9472.126 10662.454 8420.412 11933.174 10569.989 9017.133
#> gene_83 9077.454 9570.794 10662.454 10145.075 9447.096 7408.871 11321.511
#> gene_84 12234.830 9965.466 10859.907 10753.779 9148.767 12051.763 9417.894
#> gene_85 10458.806 9373.458 9675.190 10043.624 8850.438 11063.914 10019.036
#> gene_86 8880.118 9077.454 9872.643 10043.624 8651.551 10273.634 12223.224
#> gene_87 8682.782 9768.130 9181.558 9840.722 9148.767 10076.064 9718.465
#> gene_88 9965.466 9274.790 9280.284 11261.033 10441.527 11063.914 9217.513
#> gene_89 9965.466 9472.126 10070.096 8014.609 8750.994 8594.290 10319.607
#> gene_90 9472.126 10458.806 11254.813 9434.919 10143.198 9878.495 10219.417
#> gene_91 9176.122 10458.806 10761.181 7405.904 7557.677 12446.903 9017.133
#> gene_92 9669.462 10557.474 10761.181 10145.075 9745.426 11854.193 10219.417
#> gene_93 10162.802 10360.138 9280.284 10753.779 9049.324 10767.559 9417.894
#> gene_94 10064.134 11149.482 9971.369 9942.173 9248.210 9582.140 9518.084
#> gene_95 10064.134 10557.474 9181.558 9536.370 9944.312 8396.720 9417.894
#> gene_96 11149.482 9768.130 10563.728 8724.764 10242.641 9878.495 11121.130
#> gene_97 9669.462 9077.454 9773.916 10145.075 8452.665 9088.215 9518.084
#> gene_98 10261.470 10853.478 9280.284 9637.821 8949.881 10076.064 8616.371
#> gene_99 10754.810 9373.458 10168.822 9637.821 10640.414 10471.204 10419.798
#> gene_100 8682.782 10656.142 8786.652 12985.695 8750.994 11952.978 9117.323
#> sample_8 sample_9 sample_10 sample_11 sample_12 sample_13 sample_14
#> gene_1 10898.91 9867.136 10536.779 10615.711 11379.517 7834.472 9294.048
#> gene_2 7099.29 10550.996 10735.586 9402.487 8285.087 12555.243 9590.666
#> gene_3 9199.08 9769.441 9145.129 10716.813 11080.056 8336.681 11370.378
#> gene_4 9899.01 8108.636 9343.936 9503.589 10780.595 9039.775 10381.649
#> gene_5 10998.90 8890.191 10337.972 9099.181 9882.212 9742.869 10974.886
#> gene_6 10398.96 10844.080 9840.954 10110.201 10381.314 12655.685 9392.921
#> gene_7 8999.10 9085.580 8846.918 8896.977 12178.079 8939.333 10480.522
#> gene_8 11598.84 8401.719 8648.111 10009.099 8884.009 10445.962 9887.285
#> gene_9 9899.01 10062.524 11033.797 11323.425 12876.822 9341.101 9590.666
#> gene_10 10398.96 8597.108 9145.129 9907.997 11878.618 8437.123 9689.539
#> gene_11 10498.95 8792.497 10238.569 11424.527 8484.727 11751.708 8503.065
#> gene_12 10598.94 10355.608 9244.533 11222.323 9283.290 8236.239 10678.268
#> gene_13 9099.09 11527.941 9045.726 10211.303 10481.134 10546.404 10381.649
#> gene_14 10198.98 9476.358 9642.147 11020.119 9383.110 10445.962 11666.996
#> gene_15 9599.04 10844.080 11332.008 8189.263 10381.314 10044.194 10282.776
#> gene_16 10598.94 11723.329 10735.586 10009.099 10381.314 10144.636 9788.412
#> gene_17 8599.14 11234.857 9542.744 9200.283 9882.212 9843.311 9294.048
#> gene_18 10198.98 10160.219 8946.322 10110.201 8384.907 9240.659 9788.412
#> gene_19 9599.04 10550.996 11630.219 11020.119 11579.158 10646.846 11864.742
#> gene_20 8899.11 10648.691 9642.147 9806.895 8584.548 10646.846 9294.048
#> gene_21 9699.03 9378.664 9244.533 11626.731 9083.649 9140.217 10381.649
#> gene_22 8799.12 8987.886 8648.111 9099.181 9582.751 9341.101 9096.302
#> gene_23 9699.03 9085.580 11332.008 10615.711 9482.931 8336.681 8799.684
#> gene_24 8799.12 9378.664 11133.201 9503.589 10481.134 9341.101 9986.158
#> gene_25 10398.96 10062.524 10437.376 11323.425 7885.806 11249.498 9294.048
#> gene_26 10098.99 10453.302 8747.515 10615.711 10580.954 10445.962 9986.158
#> gene_27 10698.93 9085.580 10139.165 9503.589 9283.290 10144.636 10282.776
#> gene_28 9999.00 8597.108 10238.569 9705.793 10181.673 9039.775 9392.921
#> gene_29 9899.01 8010.942 9145.129 10211.303 8784.188 9943.753 10777.141
#> gene_30 10698.93 7815.553 9542.744 10110.201 9782.392 10245.078 10876.013
#> gene_31 8899.11 9769.441 9542.744 9503.589 10081.853 8939.333 8898.556
#> gene_32 10398.96 10257.913 9045.726 8795.875 9782.392 10948.172 8997.429
#> gene_33 9099.09 9769.441 10139.165 9604.691 10181.673 10445.962 9689.539
#> gene_34 10098.99 9671.747 10139.165 8593.671 12277.900 8537.565 9195.175
#> gene_35 8899.11 10941.774 10934.394 12031.139 10780.595 8537.565 10183.904
#> gene_36 10498.95 9574.052 11630.219 10919.017 9283.290 10646.846 9096.302
#> gene_37 11198.88 7620.164 9045.726 9604.691 11279.697 7734.030 11963.615
#> gene_38 10798.92 11527.941 7952.286 10919.017 10980.236 11751.708 9294.048
#> gene_39 10298.97 9574.052 9642.147 11323.425 9682.571 10847.730 11469.251
#> gene_40 9999.00 10746.385 9940.358 9402.487 10680.775 11550.824 9096.302
#> gene_41 9899.01 10355.608 8548.708 10211.303 10580.954 10245.078 10480.522
#> gene_42 9299.07 9183.275 10636.183 10514.609 9083.649 10345.520 11073.759
#> gene_43 9099.09 8792.497 10139.165 12637.751 8784.188 12053.033 7810.955
#> gene_44 9799.02 11430.246 11530.815 10211.303 9582.751 10546.404 12359.106
#> gene_45 9399.06 11527.941 9840.954 10817.915 8285.087 9843.311 8503.065
#> gene_46 9899.01 11332.552 10536.779 10413.507 10081.853 10646.846 11172.632
#> gene_47 9299.07 11234.857 10536.779 10009.099 11479.337 10044.194 10282.776
#> gene_48 9799.02 9574.052 10337.972 9705.793 9782.392 10445.962 9887.285
#> gene_49 9899.01 12114.107 9244.533 8795.875 8884.009 10345.520 8305.319
#> gene_50 11798.82 8694.803 10139.165 11525.629 10580.954 10546.404 9887.285
#> gene_51 10298.97 9867.136 8946.322 10919.017 13076.462 10747.288 7316.591
#> gene_52 8799.12 9867.136 10238.569 8088.161 10481.134 8738.449 10876.013
#> gene_53 10498.95 10941.774 10934.394 8998.079 11179.876 10646.846 10282.776
#> gene_54 10598.94 10257.913 11133.201 8290.365 9482.931 10546.404 9096.302
#> gene_55 9399.06 8890.191 9840.954 11020.119 9283.290 9541.985 10183.904
#> gene_56 8599.14 10453.302 10536.779 12637.751 8983.829 11751.708 11963.615
#> gene_57 10698.93 10746.385 9940.358 10716.813 9682.571 9642.427 9788.412
#> gene_58 9899.01 9964.830 10039.761 9200.283 9582.751 9441.543 10876.013
#> gene_59 9899.01 11625.635 11530.815 10312.405 10680.775 10144.636 9590.666
#> gene_60 11798.82 10160.219 11729.622 11525.629 10880.415 9541.985 9788.412
#> gene_61 10098.99 10453.302 8548.708 9301.385 8285.087 10044.194 9986.158
#> gene_62 9799.02 9867.136 9045.726 10919.017 10980.236 8437.123 11370.378
#> gene_63 10798.92 9769.441 9343.936 10615.711 10680.775 10144.636 9096.302
#> gene_64 10198.98 9183.275 9741.551 8998.079 8983.829 10445.962 9392.921
#> gene_65 10398.96 10062.524 8250.497 9503.589 10481.134 8236.239 9590.666
#> gene_66 11098.89 9280.969 9940.358 8088.161 11878.618 11550.824 11469.251
#> gene_67 10998.90 9964.830 12226.640 9806.895 9482.931 10847.730 10282.776
#> gene_68 11398.86 9671.747 8548.708 10615.711 11878.618 12053.033 10085.031
#> gene_69 10198.98 9964.830 10039.761 9907.997 9682.571 12354.359 10183.904
#> gene_70 10298.97 9085.580 10238.569 11323.425 10880.415 8537.565 10282.776
#> gene_71 8399.16 10257.913 9443.340 10312.405 9482.931 9541.985 10678.268
#> gene_72 9999.00 12016.413 9542.744 10110.201 9882.212 9742.869 9096.302
#> gene_73 9899.01 8890.191 10934.394 9503.589 10780.595 9541.985 11864.742
#> gene_74 8699.13 8792.497 11332.008 9806.895 9383.110 10245.078 11666.996
#> gene_75 9199.08 10844.080 8846.918 10919.017 7885.806 9341.101 9294.048
#> gene_76 11698.83 10453.302 10834.990 8593.671 9383.110 9039.775 11864.742
#> gene_77 9099.09 9085.580 10238.569 10716.813 10181.673 9943.753 8997.429
#> gene_78 9899.01 9769.441 10039.761 9604.691 9383.110 9039.775 9590.666
#> gene_79 8999.10 8890.191 9642.147 9402.487 9183.470 9742.869 9195.175
#> gene_80 10598.94 9964.830 8449.304 9907.997 10780.595 9742.869 9986.158
#> gene_81 11098.89 10257.913 10934.394 10615.711 9882.212 10546.404 8008.701
#> gene_82 10598.94 10257.913 11232.604 8694.773 10281.493 10747.288 9788.412
#> gene_83 11898.81 11625.635 9244.533 9402.487 8784.188 9240.659 10777.141
#> gene_84 9499.05 10453.302 11332.008 7784.855 9383.110 10546.404 10777.141
#> gene_85 8699.13 10355.608 9840.954 9099.181 10381.314 11550.824 9392.921
#> gene_86 10498.95 9476.358 12226.640 9301.385 10481.134 10044.194 10282.776
#> gene_87 11698.83 9671.747 10437.376 9402.487 10181.673 9140.217 10480.522
#> gene_88 8099.19 9574.052 12027.833 8795.875 10481.134 9240.659 10381.649
#> gene_89 11298.87 9964.830 11133.201 10413.507 11379.517 9742.869 11073.759
#> gene_90 11098.89 9476.358 9443.340 8896.977 11379.517 10144.636 11073.759
#> gene_91 11698.83 8890.191 9840.954 9301.385 9982.032 9642.427 9392.921
#> gene_92 7799.22 10160.219 8449.304 10615.711 10481.134 10245.078 9788.412
#> gene_93 9599.04 11527.941 10834.990 9099.181 9782.392 9039.775 7514.337
#> gene_94 8599.14 9867.136 8051.690 12738.854 9083.649 9843.311 9689.539
#> gene_95 9099.09 10746.385 10238.569 9099.181 9083.649 10747.288 8503.065
#> gene_96 8999.10 10648.691 11033.797 9806.895 8384.907 9943.753 11864.742
#> gene_97 10498.95 11918.718 10934.394 9503.589 8784.188 9341.101 9689.539
#> gene_98 11798.82 11137.163 10536.779 9402.487 10181.673 9943.753 9491.794
#> gene_99 10698.93 10648.691 9542.744 8998.079 8584.548 9943.753 10974.886
#> gene_100 9999.00 10257.913 6858.847 9705.793 8484.727 9943.753 8601.938
#> sample_15 sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1 9576.060 10317.382 9083.649 10884.902 8793.844 10801.704
#> gene_2 11571.072 10219.122 10181.673 10683.330 8294.194 11396.294
#> gene_3 10274.314 7860.863 10181.673 9877.041 8494.054 11792.687
#> gene_4 9975.062 9629.557 11579.158 9171.538 8893.774 9711.624
#> gene_5 8079.800 10120.861 11279.697 10280.185 10892.375 10603.508
#> gene_6 12169.576 10513.904 10880.415 8566.821 8893.774 10108.017
#> gene_7 10374.065 10808.686 10880.415 9776.255 11691.816 10702.606
#> gene_8 9177.057 9727.818 9782.392 9776.255 9493.355 8324.249
#> gene_9 10773.067 10120.861 12377.720 9574.683 9193.565 10306.213
#> gene_10 8778.055 12184.337 10281.493 8969.966 9293.495 9909.821
#> gene_11 9875.312 9531.296 8983.829 9977.827 10492.655 8819.740
#> gene_12 10274.314 11201.729 9782.392 9473.896 7794.544 10504.410
#> gene_13 11870.324 9826.078 8285.087 9473.896 9793.145 8126.053
#> gene_14 9576.060 10513.904 10481.134 11086.475 9893.075 8621.544
#> gene_15 8079.800 10120.861 9482.931 11086.475 9593.285 10504.410
#> gene_16 9576.060 10808.686 9782.392 11086.475 10092.935 9909.821
#> gene_17 9675.810 9924.339 10181.673 11993.550 11092.235 11198.097
#> gene_18 11172.070 10022.600 9682.571 10481.758 9893.075 10108.017
#> gene_19 9875.312 9334.774 7785.985 10078.613 11092.235 10900.803
#> gene_20 10773.067 9727.818 11080.056 10481.758 11092.235 10603.508
#> gene_21 9775.561 10612.165 12377.720 10280.185 8693.914 9909.821
#> gene_22 10174.564 9531.296 11778.798 11086.475 9393.425 7729.660
#> gene_23 11072.319 7959.124 9982.032 10380.972 10492.655 10008.919
#> gene_24 10972.569 10710.425 10880.415 9171.538 10192.865 9315.231
#> gene_25 9476.309 11103.469 9882.212 11388.833 8394.124 11297.196
#> gene_26 11471.322 10415.643 10281.493 9877.041 9693.215 9017.937
#> gene_27 8678.304 10710.425 8584.548 7357.388 8893.774 10603.508
#> gene_28 9376.559 9433.035 10481.134 9171.538 7694.614 10900.803
#> gene_29 9975.062 10513.904 9083.649 9574.683 9393.425 8621.544
#> gene_30 9077.307 10415.643 9782.392 10683.330 10692.515 9315.231
#> gene_31 11172.070 10710.425 8884.009 11187.261 8693.914 9315.231
#> gene_32 9576.060 11987.816 9882.212 8062.891 10192.865 8819.740
#> gene_33 11072.319 9039.992 10081.853 9574.683 10092.935 9315.231
#> gene_34 10274.314 10513.904 7985.626 10683.330 10392.725 10207.115
#> gene_35 10374.065 11103.469 9083.649 10078.613 10192.865 9909.821
#> gene_36 10673.317 9433.035 11479.337 8869.180 9993.005 10504.410
#> gene_37 10274.314 9531.296 9083.649 10280.185 9993.005 10603.508
#> gene_38 10573.566 9629.557 9882.212 10683.330 9193.565 9315.231
#> gene_39 12269.327 9531.296 7586.345 9473.896 10392.725 11297.196
#> gene_40 8977.556 10219.122 8584.548 10985.688 9193.565 10999.901
#> gene_41 10473.815 11693.033 9383.110 10179.399 10492.655 10702.606
#> gene_42 9376.559 8843.471 8684.368 11288.047 9493.355 9513.428
#> gene_43 8977.556 10120.861 9183.470 11187.261 9693.215 10306.213
#> gene_44 10673.317 10710.425 10880.415 7861.318 9993.005 7927.857
#> gene_45 10872.818 9039.992 9982.032 8365.249 10092.935 10801.704
#> gene_46 10274.314 9924.339 9183.470 9776.255 11591.886 10405.312
#> gene_47 11271.820 11005.208 11479.337 8667.607 10892.375 10702.606
#> gene_48 9975.062 11693.033 10081.853 9171.538 8993.704 11098.999
#> gene_49 9476.309 9924.339 10880.415 11388.833 9293.495 9315.231
#> gene_50 8179.551 9433.035 10780.595 9373.110 9693.215 10999.901
#> gene_51 8877.805 9924.339 10580.954 9473.896 10892.375 10108.017
#> gene_52 8478.803 10120.861 10281.493 12195.122 9793.145 9216.133
#> gene_53 10274.314 8941.731 9083.649 9877.041 9393.425 10504.410
#> gene_54 10074.813 11889.555 8684.368 10078.613 11092.235 10306.213
#> gene_55 8478.803 9433.035 10780.595 10078.613 10992.305 10504.410
#> gene_56 10473.815 10906.947 11379.517 7962.104 11591.886 9315.231
#> gene_57 10274.314 8352.167 8983.829 10380.972 9693.215 10405.312
#> gene_58 9675.810 10317.382 12178.079 10380.972 11691.816 8522.446
#> gene_59 6882.793 8843.471 9982.032 9877.041 8993.704 9513.428
#> gene_60 9975.062 9629.557 9183.470 10179.399 8793.844 10504.410
#> gene_61 9975.062 9039.992 9682.571 9070.752 8893.774 8522.446
#> gene_62 11172.070 9826.078 9283.290 10481.758 9793.145 9216.133
#> gene_63 10174.564 10415.643 11579.158 9272.324 11092.235 9017.937
#> gene_64 10174.564 10022.600 9183.470 10884.902 10892.375 8423.348
#> gene_65 9376.559 11299.990 10980.236 11388.833 9093.634 10603.508
#> gene_66 9775.561 9826.078 10081.853 9373.110 10792.445 11198.097
#> gene_67 10972.569 8941.731 9383.110 8566.821 10292.795 9117.035
#> gene_68 8478.803 10808.686 10381.314 9776.255 11891.676 10999.901
#> gene_69 10573.566 9924.339 10081.853 10179.399 9793.145 10008.919
#> gene_70 11670.823 8843.471 9582.751 8969.966 9093.634 10603.508
#> gene_71 10972.569 9727.818 8983.829 10884.902 10592.585 9711.624
#> gene_72 9376.559 10120.861 8983.829 10179.399 11092.235 10306.213
#> gene_73 9975.062 9531.296 11778.798 7256.601 11392.026 8225.151
#> gene_74 10673.317 9236.514 9582.751 8566.821 12491.256 8819.740
#> gene_75 9077.307 10906.947 10081.853 10078.613 9093.634 9315.231
#> gene_76 11271.820 9236.514 9283.290 9977.827 10092.935 9612.526
#> gene_77 8279.302 10317.382 8983.829 10380.972 9293.495 10008.919
#> gene_78 10174.564 10022.600 9682.571 11489.619 9793.145 12387.276
#> gene_79 9077.307 9531.296 11279.697 10280.185 9293.495 9315.231
#> gene_80 8678.304 9924.339 9982.032 9776.255 11292.096 10008.919
#> gene_81 9476.309 9433.035 10081.853 9675.469 9893.075 9414.330
#> gene_82 9376.559 9039.992 11179.876 9675.469 9093.634 9909.821
#> gene_83 8877.805 9531.296 9383.110 10985.688 10592.585 10306.213
#> gene_84 9576.060 9629.557 10181.673 9070.752 7994.404 11198.097
#> gene_85 9975.062 9138.253 10680.775 11590.405 10092.935 11098.999
#> gene_86 9875.312 12479.120 10880.415 9675.469 9893.075 9612.526
#> gene_87 11072.319 8548.688 7686.165 10280.185 13390.627 9414.330
#> gene_88 9875.312 8548.688 11179.876 10582.544 10692.515 9810.722
#> gene_89 9875.312 7566.080 9882.212 11288.047 10492.655 11792.687
#> gene_90 10374.065 11791.294 8684.368 9776.255 10192.865 10108.017
#> gene_91 8279.302 9629.557 10780.595 10380.972 8693.914 10900.803
#> gene_92 10473.815 10808.686 11080.056 10078.613 10792.445 10801.704
#> gene_93 10074.813 10120.861 8584.548 10481.758 10292.795 8126.053
#> gene_94 10074.813 9433.035 11479.337 11288.047 10092.935 9414.330
#> gene_95 10174.564 10612.165 9283.290 8969.966 10792.445 9612.526
#> gene_96 11471.322 9433.035 10381.314 8768.393 10492.655 10900.803
#> gene_97 11271.820 9727.818 9582.751 10179.399 10792.445 9513.428
#> gene_98 10074.813 11005.208 11778.798 10582.544 8593.984 10504.410
#> gene_99 9975.062 8745.210 10181.673 9272.324 10492.655 10702.606
#> gene_100 10074.813 10906.947 8884.009 11187.261 10792.445 10801.704
#>
#> $dge_keep
#> An object of class "DGEList"
#> $counts
#> sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7 sample_8
#> gene_1 110 107 90 99 112 85 91 109
#> gene_2 104 111 98 109 109 122 121 71
#> gene_3 102 111 90 109 118 114 101 92
#> gene_4 88 93 103 99 96 77 98 99
#> gene_5 111 105 92 103 109 104 95 110
#> sample_9 sample_10 sample_11 sample_12 sample_13 sample_14 sample_15
#> gene_1 101 106 105 114 78 94 96
#> gene_2 108 108 93 83 125 97 116
#> gene_3 100 92 106 111 83 115 103
#> gene_4 83 94 94 108 90 105 100
#> gene_5 91 104 90 99 97 111 81
#> sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1 105 91 108 88 109
#> gene_2 104 102 106 83 115
#> gene_3 80 102 98 85 119
#> gene_4 98 116 91 89 98
#> gene_5 103 113 102 109 107
#> 95 more rows ...
#>
#> $samples
#> group lib.size norm.factors
#> sample_1 1 10135 1.0031640
#> sample_2 1 10135 0.9943094
#> sample_3 1 10129 0.9965943
#> sample_4 1 9857 1.0020297
#> sample_5 1 10056 0.9970823
#> 15 more rows ...
#>
#>
#> $dge_keep_cpm
#> sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7
#> gene_1 10819.246 10617.896 8915.743 10023.279 11170.221 8371.044 9121.676
#> gene_2 10229.105 11014.827 9708.253 11035.732 10871.018 12014.910 12128.822
#> gene_3 10032.392 11014.827 8915.743 11035.732 11768.625 11227.047 10124.058
#> gene_4 8655.397 9228.639 10203.572 10023.279 9574.475 7583.181 9823.343
#> gene_5 10917.603 10419.431 9113.870 10428.260 10871.018 10242.219 9522.629
#> gene_6 9147.181 8633.243 11392.338 9112.072 12167.562 9454.356 9221.914
#> gene_7 9343.894 9824.035 7925.104 9415.808 9275.273 10833.116 10525.011
#> gene_8 8557.040 10816.362 9609.189 9922.034 10172.880 9848.287 9923.581
#> gene_9 8261.970 9427.104 10203.572 9213.317 9973.411 10045.253 8319.770
#> gene_10 10819.246 9030.173 9411.062 11035.732 10073.145 9060.424 10124.058
#> gene_11 10130.748 8633.243 10897.019 10428.260 10073.145 9651.321 10725.487
#> gene_12 8655.397 9724.802 8321.360 9314.563 8876.336 10340.701 9422.390
#> gene_13 9442.251 9129.406 9014.806 9618.298 10472.082 9848.287 8620.485
#> gene_14 8557.040 10518.664 10996.082 9517.053 8676.868 10439.184 9622.867
#> gene_15 8950.467 9327.871 8816.679 8200.865 10472.082 9454.356 10424.772
#> gene_16 10032.392 9824.035 8519.487 8808.336 12167.562 10045.253 12329.298
#> gene_17 9638.965 9228.639 11293.274 10731.996 10272.614 9749.804 9422.390
#> gene_18 10622.532 9327.871 12779.231 9922.034 10172.880 8961.941 10525.011
#> gene_19 12097.884 9327.871 9212.934 9415.808 10871.018 11522.496 8219.532
#> gene_20 10720.889 10022.500 9510.125 9314.563 9973.411 9257.390 9622.867
#> gene_21 11212.673 7938.614 10500.763 10124.525 10272.614 10340.701 9322.152
#> gene_22 9638.965 11114.060 8519.487 11339.468 10671.550 8666.493 8319.770
#> gene_23 11507.743 10220.966 8321.360 11643.203 9973.411 9355.873 10224.296
#> gene_24 9048.824 11213.292 8321.360 9719.544 9375.007 8568.010 9422.390
#> gene_25 8360.326 10121.733 9906.381 9517.053 9275.273 9158.907 8820.961
#> gene_26 10229.105 9824.035 10500.763 10124.525 9375.007 8961.941 10324.534
#> gene_27 11507.743 9923.268 9609.189 9213.317 10871.018 9749.804 9622.867
#> gene_28 8950.467 10220.966 9807.317 10630.751 10372.348 10340.701 8319.770
#> gene_29 10819.246 10220.966 10599.827 12554.410 11668.891 8764.975 11427.154
#> gene_30 8950.467 9923.268 9807.317 9922.034 12765.967 9749.804 10525.011
#> gene_31 9442.251 10717.129 10897.019 9314.563 10272.614 10045.253 11828.107
#> gene_32 10622.532 11411.758 11194.210 9112.072 11269.955 10734.633 10825.725
#> gene_33 8852.110 9526.337 9906.381 12048.184 9175.538 9946.770 10324.534
#> gene_34 10327.462 8335.545 9311.998 9922.034 10073.145 10537.667 10424.772
#> gene_35 9835.678 10617.896 10698.891 10934.487 10472.082 8764.975 10725.487
#> gene_36 8753.754 11213.292 9212.934 11238.222 8876.336 8764.975 11026.202
#> gene_37 10130.748 10220.966 9807.317 9517.053 10272.614 8764.975 9322.152
#> gene_38 10819.246 11510.990 9411.062 10327.015 10671.550 10734.633 10925.963
#> gene_39 12097.884 9427.104 12779.231 9820.789 9075.804 9158.907 9121.676
#> gene_40 11212.673 10617.896 9510.125 11238.222 9973.411 9158.907 10224.296
#> gene_41 9245.537 8137.079 8024.168 9922.034 9474.741 8863.458 9723.105
#> gene_42 11802.814 10419.431 11986.720 8707.091 9375.007 9454.356 9823.343
#> gene_43 7376.759 10816.362 10104.508 8605.846 9674.209 9158.907 9422.390
#> gene_44 9442.251 8633.243 9708.253 9010.827 9873.677 10734.633 9221.914
#> gene_45 9442.251 9724.802 8024.168 9314.563 10073.145 9060.424 9522.629
#> gene_46 8261.970 10121.733 8915.743 10934.487 10871.018 10045.253 10424.772
#> gene_47 11114.316 9526.337 10302.636 9415.808 10172.880 10439.184 10725.487
#> gene_48 11114.316 10518.664 9411.062 10023.279 10871.018 8469.527 10925.963
#> gene_49 10032.392 11114.060 9807.317 9719.544 12965.435 9946.770 9522.629
#> gene_50 9737.321 10022.500 10302.636 11643.203 11569.157 9848.287 10124.058
#> gene_51 9147.181 9327.871 10500.763 10225.770 9674.209 8764.975 10124.058
#> gene_52 10819.246 11312.525 9807.317 10327.015 9574.475 8666.493 11828.107
#> gene_53 10327.462 10816.362 10897.019 10934.487 10372.348 10439.184 8219.532
#> gene_54 9343.894 10518.664 9807.317 12655.656 9474.741 10734.633 8820.961
#> gene_55 10425.819 8137.079 8519.487 7998.374 10771.284 9848.287 10825.725
#> gene_56 11311.030 9923.268 10996.082 8200.865 8976.070 8272.561 10324.534
#> gene_57 10425.819 10518.664 8717.615 10225.770 9574.475 11227.047 11427.154
#> gene_58 9934.035 10022.500 10302.636 9213.317 10771.284 10734.633 10124.058
#> gene_59 9737.321 11014.827 11590.465 9415.808 10172.880 9158.907 10424.772
#> gene_60 11802.814 12999.480 10104.508 10630.751 11768.625 10636.150 9723.105
#> gene_61 10819.246 11213.292 10996.082 8504.601 9574.475 11916.427 8820.961
#> gene_62 8753.754 8831.708 8915.743 10529.506 10871.018 9946.770 9622.867
#> gene_63 9442.251 10518.664 10203.572 9213.317 10871.018 10833.116 9622.867
#> gene_64 9638.965 9030.173 10104.508 10225.770 11170.221 9060.424 8319.770
#> gene_65 9343.894 10617.896 10599.827 9618.298 8776.602 9848.287 10625.249
#> gene_66 9934.035 12205.619 12283.912 11440.713 10472.082 10143.736 8520.247
#> gene_67 9245.537 9129.406 10104.508 9213.317 10671.550 10045.253 11427.154
#> gene_68 10130.748 10220.966 9708.253 11440.713 8976.070 11227.047 10725.487
#> gene_69 11507.743 10617.896 10698.891 11136.977 8776.602 9946.770 12429.536
#> gene_70 8950.467 10022.500 10302.636 10428.260 9873.677 10143.736 10023.820
#> gene_71 9442.251 11808.688 9311.998 10023.279 10771.284 12704.290 9923.581
#> gene_72 10819.246 9724.802 9212.934 7998.374 8976.070 10340.701 11627.631
#> gene_73 9934.035 9923.268 12878.295 10023.279 9474.741 11325.530 11828.107
#> gene_74 9245.537 9923.268 9906.381 10023.279 8377.666 10143.736 10023.820
#> gene_75 10819.246 10518.664 11491.401 10630.751 8976.070 10931.599 10925.963
#> gene_76 11212.673 8930.941 10797.955 10428.260 10771.284 10242.219 10424.772
#> gene_77 9737.321 9824.035 12581.103 9112.072 9674.209 10242.219 10324.534
#> gene_78 10130.748 10816.362 9311.998 10934.487 9973.411 10636.150 10124.058
#> gene_79 9737.321 9228.639 10104.508 9922.034 8676.868 9848.287 9923.581
#> gene_80 10819.246 9923.268 9906.381 9010.827 9773.943 10833.116 8219.532
#> gene_81 8753.754 9327.871 12085.784 9719.544 9075.804 8961.941 8921.200
#> gene_82 11802.814 9526.337 10698.891 8403.355 11968.094 10537.667 9021.438
#> gene_83 9048.824 9625.570 10698.891 10124.525 9474.741 7386.215 11326.916
#> gene_84 12196.241 10022.500 10897.019 10731.996 9175.538 12014.910 9422.390
#> gene_85 10425.819 9427.104 9708.253 10023.279 8876.336 11030.081 10023.820
#> gene_86 8852.110 9129.406 9906.381 10023.279 8676.868 10242.219 12229.060
#> gene_87 8655.397 9824.035 9212.934 9820.789 9175.538 10045.253 9723.105
#> gene_88 9934.035 9327.871 9311.998 11238.222 10472.082 11030.081 9221.914
#> gene_89 9934.035 9526.337 10104.508 7998.374 8776.602 8568.010 10324.534
#> gene_90 9442.251 10518.664 11293.274 9415.808 10172.880 9848.287 10224.296
#> gene_91 9147.181 10518.664 10797.955 7390.903 7579.793 12408.842 9021.438
#> gene_92 9638.965 10617.896 10797.955 10124.525 9773.943 11817.944 10224.296
#> gene_93 10130.748 10419.431 9311.998 10731.996 9075.804 10734.633 9422.390
#> gene_94 10032.392 11213.292 10005.444 9922.034 9275.273 9552.838 9522.629
#> gene_95 10032.392 10617.896 9212.934 9517.053 9973.411 8371.044 9422.390
#> gene_96 11114.316 9824.035 10599.827 8707.091 10272.614 9848.287 11126.440
#> gene_97 9638.965 9129.406 9807.317 10124.525 8477.400 9060.424 9522.629
#> gene_98 10229.105 10915.594 9311.998 9618.298 8976.070 10045.253 8620.485
#> gene_99 10720.889 9427.104 10203.572 9618.298 10671.550 10439.184 10424.772
#> gene_100 8655.397 10717.129 8816.679 12959.391 8776.602 11916.427 9121.676
#> sample_8 sample_9 sample_10 sample_11 sample_12 sample_13 sample_14
#> gene_1 10800.749 9919.362 10489.161 10648.227 11367.827 7826.737 9347.142
#> gene_2 7035.350 10606.843 10687.070 9431.287 8276.576 12542.848 9645.455
#> gene_3 9116.228 9821.150 9103.800 10749.639 11068.674 8328.451 11435.333
#> gene_4 9809.855 8151.555 9301.709 9532.699 10769.521 9030.851 10440.956
#> gene_5 10899.838 8937.247 10291.252 9127.052 9872.061 9733.250 11037.582
#> gene_6 10305.302 10901.477 9796.481 10141.169 10370.650 12643.191 9446.580
#> gene_7 8918.050 9133.670 8806.937 8924.229 12165.570 8930.508 10540.394
#> gene_8 11494.375 8446.189 8609.029 10039.757 8874.883 10435.650 9943.768
#> gene_9 9809.855 10115.785 10983.933 11358.109 12863.594 9331.879 9645.455
#> gene_10 10305.302 8642.612 9103.800 9938.345 11866.416 8428.794 9744.893
#> gene_11 10404.391 8839.035 10192.298 11459.521 8476.012 11740.106 8551.640
#> gene_12 10503.481 10410.420 9202.755 11256.697 9273.754 8228.108 10739.269
#> gene_13 9017.139 11588.958 9004.846 10242.580 10470.367 10535.992 10440.956
#> gene_14 10107.123 9526.516 9598.572 11053.874 9373.472 10435.650 11733.646
#> gene_15 9512.586 10901.477 11280.796 8214.347 10370.650 10034.278 10341.519
#> gene_16 10503.481 11785.381 10687.070 10039.757 10370.650 10134.621 9844.330
#> gene_17 8521.692 11294.323 9499.618 9228.464 9872.061 9833.593 9347.142
#> gene_18 10107.123 10213.996 8905.892 10141.169 8376.294 9231.536 9844.330
#> gene_19 9512.586 10606.843 11577.659 11053.874 11567.263 10636.335 11932.522
#> gene_20 8818.960 10705.054 9598.572 9836.934 8575.729 10636.335 9347.142
#> gene_21 9611.676 9428.304 9202.755 11662.344 9074.318 9131.193 10440.956
#> gene_22 8719.871 9035.458 8609.029 9127.052 9572.907 9331.879 9148.267
#> gene_23 9611.676 9133.670 11280.796 10648.227 9473.190 8328.451 8849.954
#> gene_24 8719.871 9428.304 11082.887 9532.699 10470.367 9331.879 10043.206
#> gene_25 10305.302 10115.785 10390.207 11358.109 7877.705 11238.392 9347.142
#> gene_26 10008.033 10508.631 8707.983 10648.227 10570.085 10435.650 10043.206
#> gene_27 10602.570 9133.670 10093.344 9532.699 9273.754 10134.621 10341.519
#> gene_28 9908.944 8642.612 10192.298 9735.522 10171.214 9030.851 9446.580
#> gene_29 9809.855 8053.343 9103.800 10242.580 8775.165 9933.936 10838.707
#> gene_30 10602.570 7856.920 9499.618 10141.169 9772.343 10234.964 10938.145
#> gene_31 8818.960 9821.150 9499.618 9532.699 10071.496 8930.508 8949.391
#> gene_32 10305.302 10312.208 9004.846 8822.817 9772.343 10937.364 9048.829
#> gene_33 9017.139 9821.150 10093.344 9634.110 10171.214 10435.650 9744.893
#> gene_34 10008.033 9722.939 10093.344 8619.993 12265.287 8529.137 9247.704
#> gene_35 8818.960 10999.689 10884.979 12067.991 10769.521 8529.137 10242.081
#> gene_36 10404.391 9624.727 11577.659 10952.462 9273.754 10636.335 9148.267
#> gene_37 11098.017 7660.497 9004.846 9634.110 11268.110 7726.394 12031.959
#> gene_38 10701.659 11588.958 7916.348 10952.462 10968.956 11740.106 9347.142
#> gene_39 10206.212 9624.727 9598.572 11358.109 9672.625 10837.021 11534.771
#> gene_40 9908.944 10803.266 9895.435 9431.287 10669.803 11539.420 9148.267
#> gene_41 9809.855 10410.420 8510.074 10242.580 10570.085 10234.964 10540.394
#> gene_42 9215.318 9231.881 10588.116 10546.816 9074.318 10335.307 11137.020
#> gene_43 9017.139 8839.035 10093.344 12676.461 8775.165 12041.134 7855.577
#> gene_44 9710.765 11490.746 11478.705 10242.580 9572.907 10535.992 12429.710
#> gene_45 9314.407 11588.958 9796.481 10851.051 8276.576 9833.593 8551.640
#> gene_46 9809.855 11392.535 10489.161 10445.404 10071.496 10636.335 11236.458
#> gene_47 9215.318 11294.323 10489.161 10039.757 11467.545 10034.278 10341.519
#> gene_48 9710.765 9624.727 10291.252 9735.522 9772.343 10435.650 9943.768
#> gene_49 9809.855 12178.227 9202.755 8822.817 8874.883 10335.307 8352.765
#> gene_50 11692.554 8740.824 10093.344 11560.932 10570.085 10535.992 9943.768
#> gene_51 10206.212 9919.362 8905.892 10952.462 13063.030 10736.678 7358.388
#> gene_52 8719.871 9919.362 10192.298 8112.935 10470.367 8729.822 10938.145
#> gene_53 10404.391 10999.689 10884.979 9025.640 11168.392 10636.335 10341.519
#> gene_54 10503.481 10312.208 11082.887 8315.758 9473.190 10535.992 9148.267
#> gene_55 9314.407 8937.247 9796.481 11053.874 9273.754 9532.565 10242.081
#> gene_56 8521.692 10508.631 10489.161 12676.461 8974.601 11740.106 12031.959
#> gene_57 10602.570 10803.266 9895.435 10749.639 9672.625 9632.907 9844.330
#> gene_58 9809.855 10017.573 9994.389 9228.464 9572.907 9432.222 10938.145
#> gene_59 9809.855 11687.169 11478.705 10343.992 10669.803 10134.621 9645.455
#> gene_60 11692.554 10213.996 11676.613 11560.932 10869.238 9532.565 9844.330
#> gene_61 10008.033 10508.631 8510.074 9329.875 8276.576 10034.278 10043.206
#> gene_62 9710.765 9919.362 9004.846 10952.462 10968.956 8428.794 11435.333
#> gene_63 10701.659 9821.150 9301.709 10648.227 10669.803 10134.621 9148.267
#> gene_64 10107.123 9231.881 9697.526 9025.640 8974.601 10435.650 9446.580
#> gene_65 10305.302 10115.785 8213.211 9532.699 10470.367 8228.108 9645.455
#> gene_66 10998.928 9330.093 9895.435 8112.935 11866.416 11539.420 11534.771
#> gene_67 10899.838 10017.573 12171.385 9836.934 9473.190 10837.021 10341.519
#> gene_68 11296.196 9722.939 8510.074 10648.227 11866.416 12041.134 10142.643
#> gene_69 10107.123 10017.573 9994.389 9938.345 9672.625 12342.162 10242.081
#> gene_70 10206.212 9133.670 10192.298 11358.109 10869.238 8529.137 10341.519
#> gene_71 8323.513 10312.208 9400.663 10343.992 9473.190 9532.565 10739.269
#> gene_72 9908.944 12080.015 9499.618 10141.169 9872.061 9733.250 9148.267
#> gene_73 9809.855 8937.247 10884.979 9532.699 10769.521 9532.565 11932.522
#> gene_74 8620.781 8839.035 11280.796 9836.934 9373.472 10234.964 11733.646
#> gene_75 9116.228 10901.477 8806.937 10952.462 7877.705 9331.879 9347.142
#> gene_76 11593.464 10508.631 10786.024 8619.993 9373.472 9030.851 11932.522
#> gene_77 9017.139 9133.670 10192.298 10749.639 10171.214 9933.936 9048.829
#> gene_78 9809.855 9821.150 9994.389 9634.110 9373.472 9030.851 9645.455
#> gene_79 8918.050 8937.247 9598.572 9431.287 9174.036 9733.250 9247.704
#> gene_80 10503.481 10017.573 8411.120 9938.345 10769.521 9733.250 10043.206
#> gene_81 10998.928 10312.208 10884.979 10648.227 9872.061 10535.992 8054.452
#> gene_82 10503.481 10312.208 11181.842 8721.405 10270.932 10736.678 9844.330
#> gene_83 11791.643 11687.169 9202.755 9431.287 8775.165 9231.536 10838.707
#> gene_84 9413.497 10508.631 11280.796 7808.700 9373.472 10535.992 10838.707
#> gene_85 8620.781 10410.420 9796.481 9127.052 10370.650 11539.420 9446.580
#> gene_86 10404.391 9526.516 12171.385 9329.875 10470.367 10034.278 10341.519
#> gene_87 11593.464 9722.939 10390.207 9431.287 10171.214 9131.193 10540.394
#> gene_88 8026.245 9624.727 11973.476 8822.817 10470.367 9231.536 10440.956
#> gene_89 11197.107 10017.573 11082.887 10445.404 11367.827 9733.250 11137.020
#> gene_90 10998.928 9526.516 9400.663 8924.229 11367.827 10134.621 11137.020
#> gene_91 11593.464 8937.247 9796.481 9329.875 9971.778 9632.907 9446.580
#> gene_92 7728.976 10213.996 8411.120 10648.227 10470.367 10234.964 9844.330
#> gene_93 9512.586 11588.958 10786.024 9127.052 9772.343 9030.851 7557.264
#> gene_94 8521.692 9919.362 8015.302 12777.873 9074.318 9833.593 9744.893
#> gene_95 9017.139 10803.266 10192.298 9127.052 9074.318 10736.678 8551.640
#> gene_96 8918.050 10705.054 10983.933 9836.934 8376.294 9933.936 11932.522
#> gene_97 10404.391 11981.804 10884.979 9532.699 8775.165 9331.879 9744.893
#> gene_98 11692.554 11196.112 10489.161 9431.287 10171.214 9933.936 9546.017
#> gene_99 10602.570 10705.054 9499.618 9025.640 8575.729 9933.936 11037.582
#> gene_100 9908.944 10312.208 6827.850 9735.522 8476.012 9933.936 8651.078
#> sample_15 sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1 9565.422 10320.630 9098.526 10809.819 8804.398 10825.202
#> gene_2 11558.218 10222.338 10198.348 10609.637 8304.148 11421.084
#> gene_3 10262.901 7863.337 10198.348 9808.910 8504.248 11818.339
#> gene_4 9963.981 9632.588 11598.121 9108.274 8904.448 9732.750
#> gene_5 8070.825 10124.047 11298.170 10209.274 10905.447 10626.574
#> gene_6 12156.057 10517.214 10898.235 8507.728 8904.448 10130.005
#> gene_7 10362.541 10812.089 10898.235 9708.819 11705.847 10725.888
#> gene_8 9166.863 9730.880 9798.413 9708.819 9504.748 8342.357
#> gene_9 10761.100 10124.047 12397.992 9508.637 9204.598 10328.633
#> gene_10 8768.304 12188.173 10298.332 8908.092 9304.648 9931.378
#> gene_11 9864.342 9534.296 8998.542 9909.001 10505.247 8838.926
#> gene_12 10262.901 11205.256 9798.413 9408.546 7803.898 10527.260
#> gene_13 11857.138 9829.172 8298.656 9408.546 9804.897 8143.730
#> gene_14 9565.422 10517.214 10498.299 11010.001 9904.947 8640.299
#> gene_15 8070.825 10124.047 9498.461 11010.001 9604.798 10527.260
#> gene_16 9565.422 10812.089 9798.413 11010.001 10105.047 9931.378
#> gene_17 9665.062 9927.463 10198.348 11910.819 11105.547 11222.457
#> gene_18 11159.659 10025.755 9698.429 10409.456 9904.947 10130.005
#> gene_19 9864.342 9337.713 7798.737 10009.092 11105.547 10924.515
#> gene_20 10761.100 9730.880 11098.202 10409.456 11105.547 10626.574
#> gene_21 9764.702 10615.505 12397.992 10209.274 8704.348 9931.378
#> gene_22 10163.261 9534.296 11798.089 11010.001 9404.698 7746.475
#> gene_23 11060.019 7961.629 9998.380 10309.365 10505.247 10030.691
#> gene_24 10960.379 10713.797 10898.235 9108.274 10205.097 9335.495
#> gene_25 9465.782 11106.964 9898.396 11310.274 8404.198 11321.771
#> gene_26 11458.579 10418.922 10298.332 9808.910 9704.848 9037.554
#> gene_27 8668.664 10713.797 8598.607 7306.637 8904.448 10626.574
#> gene_28 9366.142 9436.005 10498.299 9108.274 7703.848 10924.515
#> gene_29 9963.981 10517.214 9098.526 9508.637 9404.698 8640.299
#> gene_30 9067.223 10418.922 9798.413 10609.637 10705.347 9335.495
#> gene_31 11159.659 10713.797 8898.558 11110.092 8704.348 9335.495
#> gene_32 9565.422 11991.589 9898.396 8007.273 10205.097 8838.926
#> gene_33 11060.019 9042.838 10098.364 9508.637 10105.047 9335.495
#> gene_34 10262.901 10517.214 7998.704 10609.637 10405.197 10229.319
#> gene_35 10362.541 11106.964 9098.526 10009.092 10205.097 9931.378
#> gene_36 10661.460 9436.005 11498.137 8808.001 10004.997 10527.260
#> gene_37 10262.901 9534.296 9098.526 10209.274 10004.997 10626.574
#> gene_38 10561.820 9632.588 9898.396 10609.637 9204.598 9335.495
#> gene_39 12255.697 9534.296 7598.769 9408.546 10405.197 11321.771
#> gene_40 8967.583 10222.338 8598.607 10909.910 9204.598 11023.829
#> gene_41 10462.180 11696.714 9398.477 10109.183 10505.247 10725.888
#> gene_42 9366.142 8846.254 8698.591 11210.183 9504.748 9534.123
#> gene_43 8967.583 10124.047 9198.510 11110.092 9704.848 10328.633
#> gene_44 10661.460 10713.797 10898.235 7807.092 10004.997 7945.102
#> gene_45 10860.740 9042.838 9998.380 8307.546 10105.047 10825.202
#> gene_46 10262.901 9927.463 9198.510 9708.819 11605.797 10427.947
#> gene_47 11259.299 11008.672 11498.137 8607.819 10905.447 10725.888
#> gene_48 9963.981 11696.714 10098.364 9108.274 9004.498 11123.143
#> gene_49 9465.782 9927.463 10898.235 11310.274 9304.648 9335.495
#> gene_50 8170.465 9436.005 10798.251 9308.455 9704.848 11023.829
#> gene_51 8867.943 9927.463 10598.283 9408.546 10905.447 10130.005
#> gene_52 8469.384 10124.047 10298.332 12111.001 9804.897 9236.181
#> gene_53 10262.901 8944.546 9098.526 9808.910 9404.698 10527.260
#> gene_54 10063.621 11893.298 8698.591 10009.092 11105.547 10328.633
#> gene_55 8469.384 9436.005 10798.251 10009.092 11005.497 10527.260
#> gene_56 10462.180 10910.380 11398.154 7907.183 11605.797 9335.495
#> gene_57 10262.901 8354.796 8998.542 10309.365 9704.848 10427.947
#> gene_58 9665.062 10320.630 12198.024 10309.365 11705.847 8540.985
#> gene_59 6875.147 8846.254 9998.380 9808.910 9004.498 9534.123
#> gene_60 9963.981 9632.588 9198.510 10109.183 8804.398 10527.260
#> gene_61 9963.981 9042.838 9698.429 9008.183 8904.448 8540.985
#> gene_62 11159.659 9829.172 9298.494 10409.456 9804.897 9236.181
#> gene_63 10163.261 10418.922 11598.121 9208.364 11105.547 9037.554
#> gene_64 10163.261 10025.755 9198.510 10809.819 10905.447 8441.671
#> gene_65 9366.142 11303.547 10998.218 11310.274 9104.548 10626.574
#> gene_66 9764.702 9829.172 10098.364 9308.455 10805.397 11222.457
#> gene_67 10960.379 8944.546 9398.477 8507.728 10305.147 9136.867
#> gene_68 8469.384 10812.089 10398.316 9708.819 11905.947 11023.829
#> gene_69 10561.820 9927.463 10098.364 10109.183 9804.897 10030.691
#> gene_70 11657.858 8846.254 9598.445 8908.092 9104.548 10626.574
#> gene_71 10960.379 9730.880 8998.542 10809.819 10605.297 9732.750
#> gene_72 9366.142 10124.047 8998.542 10109.183 11105.547 10328.633
#> gene_73 9963.981 9534.296 11798.089 7206.546 11405.697 8243.043
#> gene_74 10661.460 9239.421 9598.445 8507.728 12506.247 8838.926
#> gene_75 9067.223 10910.380 10098.364 10009.092 9104.548 9335.495
#> gene_76 11259.299 9239.421 9298.494 9909.001 10105.047 9633.436
#> gene_77 8270.105 10320.630 8998.542 10309.365 9304.648 10030.691
#> gene_78 10163.261 10025.755 9698.429 11410.365 9804.897 12414.222
#> gene_79 9067.223 9534.296 11298.170 10209.274 9304.648 9335.495
#> gene_80 8668.664 9927.463 9998.380 9708.819 11305.647 10030.691
#> gene_81 9465.782 9436.005 10098.364 9608.728 9904.947 9434.809
#> gene_82 9366.142 9042.838 11198.186 9608.728 9104.548 9931.378
#> gene_83 8867.943 9534.296 9398.477 10909.910 10605.297 10328.633
#> gene_84 9565.422 9632.588 10198.348 9008.183 8003.998 11222.457
#> gene_85 9963.981 9141.129 10698.267 11510.456 10105.047 11123.143
#> gene_86 9864.342 12483.048 10898.235 9608.728 9904.947 9633.436
#> gene_87 11060.019 8551.379 7698.753 10209.274 13406.697 9434.809
#> gene_88 9864.342 8551.379 11198.186 10509.546 10705.347 9832.064
#> gene_89 9864.342 7568.462 9898.396 11210.183 10505.247 11818.339
#> gene_90 10362.541 11795.006 8698.591 9708.819 10205.097 10130.005
#> gene_91 8270.105 9632.588 10798.251 10309.365 8704.348 10924.515
#> gene_92 10462.180 10812.089 11098.202 10009.092 10805.397 10825.202
#> gene_93 10063.621 10124.047 8598.607 10409.456 10305.147 8143.730
#> gene_94 10063.621 9436.005 11498.137 11210.183 10105.047 9434.809
#> gene_95 10163.261 10615.505 9298.494 8908.092 10805.397 9633.436
#> gene_96 11458.579 9436.005 10398.316 8707.910 10505.247 10924.515
#> gene_97 11259.299 9730.880 9598.445 10109.183 10805.397 9534.123
#> gene_98 10063.621 11008.672 11798.089 10509.546 8604.298 10527.260
#> gene_99 9963.981 8747.963 10198.348 9208.364 10505.247 10725.888
#> gene_100 10063.621 10910.380 8898.558 11110.092 10805.397 10825.202
#>
#> $dge_keep_cpm_log
#> sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7
#> gene_1 13.40145 13.37435 13.12230 13.29121 13.44750 13.03136 13.15524
#> gene_2 13.32053 13.42729 13.24514 13.43003 13.40833 13.55266 13.56627
#> gene_3 13.29252 13.42729 13.12230 13.43003 13.52278 13.45482 13.30564
#> gene_4 13.07955 13.17206 13.31693 13.29121 13.22513 12.88878 13.26215
#> gene_5 13.41450 13.34713 13.15401 13.34835 13.40833 13.32238 13.21730
#> gene_6 13.15927 13.07585 13.47590 13.15372 13.57087 13.20692 13.17101
#> gene_7 13.18996 13.26225 12.95240 13.20102 13.17933 13.40329 13.36167
#> gene_8 13.06306 13.40106 13.23035 13.27657 13.31258 13.26580 13.27679
#> gene_9 13.01244 13.20275 13.31693 13.16966 13.28402 13.29437 13.02250
#> gene_10 13.40145 13.14070 13.20030 13.43003 13.29837 13.14552 13.30564
#> gene_11 13.30660 13.07585 13.41178 13.34835 13.29837 13.23666 13.38889
#> gene_12 13.07955 13.24760 13.02278 13.18543 13.11591 13.33619 13.20203
#> gene_13 13.20507 13.15646 13.13824 13.23172 13.35440 13.26580 13.07372
#> gene_14 13.06306 13.36080 13.42483 13.21645 13.08312 13.34986 13.23240
#> gene_15 13.12791 13.18749 13.10618 13.00174 13.35440 13.20692 13.34787
#> gene_16 13.29252 13.26225 13.05672 13.10482 13.57087 13.29437 13.58992
#> gene_17 13.23481 13.17206 13.46330 13.38977 13.32666 13.25131 13.20203
#> gene_18 13.37498 13.18749 13.64163 13.27657 13.31258 13.12976 13.36167
#> gene_19 13.56259 13.18749 13.16960 13.20102 13.40833 13.49229 13.00502
#> gene_20 13.38827 13.29110 13.21540 13.18543 13.28402 13.17655 13.23240
#> gene_21 13.45297 12.95485 13.35834 13.30571 13.32666 13.33619 13.18660
#> gene_22 13.23481 13.44023 13.05672 13.46919 13.38162 13.08140 13.02250
#> gene_23 13.49044 13.31939 13.02278 13.50732 13.28402 13.19181 13.31985
#> gene_24 13.14367 13.45305 13.02278 13.24682 13.19476 13.06491 13.20203
#> gene_25 13.02952 13.30531 13.27429 13.21645 13.17933 13.16112 13.10688
#> gene_26 13.32053 13.26225 13.35834 13.30571 13.19476 13.12976 13.33393
#> gene_27 13.49044 13.27674 13.23035 13.16966 13.40833 13.25131 13.23240
#> gene_28 13.12791 13.31939 13.25979 13.37609 13.34059 13.33619 13.02250
#> gene_29 13.40145 13.31939 13.37189 13.61602 13.51050 13.09770 13.48030
#> gene_30 13.12791 13.27674 13.25979 13.27657 13.64013 13.25131 13.36167
#> gene_31 13.20507 13.38777 13.41178 13.18543 13.32666 13.29437 13.53005
#> gene_32 13.37498 13.47836 13.45059 13.15372 13.46032 13.39012 13.40231
#> gene_33 13.11197 13.21786 13.27429 13.55665 13.16373 13.28016 13.33393
#> gene_34 13.33434 13.02523 13.18503 13.27657 13.29837 13.36340 13.34787
#> gene_35 13.26396 13.37435 13.38531 13.41673 13.35440 13.09770 13.38889
#> gene_36 13.09585 13.45305 13.16960 13.45625 13.11591 13.09770 13.42878
#> gene_37 13.30660 13.31939 13.25979 13.21645 13.32666 13.09770 13.18660
#> gene_38 13.40145 13.49085 13.20030 13.33428 13.38162 13.39012 13.41560
#> gene_39 13.56259 13.20275 13.64163 13.26177 13.14797 13.16112 13.15524
#> gene_40 13.45297 13.37435 13.21540 13.45625 13.28402 13.16112 13.31985
#> gene_41 13.17470 12.99047 12.97032 13.27657 13.21002 13.11382 13.24735
#> gene_42 13.52697 13.34713 13.54927 13.08814 13.19476 13.20692 13.26215
#> gene_43 12.84897 13.40106 13.30285 13.07127 13.24008 13.16112 13.20203
#> gene_44 13.20507 13.07585 13.24514 13.13760 13.26952 13.39012 13.17101
#> gene_45 13.20507 13.24760 12.97032 13.18543 13.29837 13.14552 13.21730
#> gene_46 13.01244 13.30531 13.12230 13.41673 13.40833 13.29437 13.34787
#> gene_47 13.44026 13.21786 13.33087 13.20102 13.31258 13.34986 13.38889
#> gene_48 13.44026 13.36080 13.20030 13.29121 13.40833 13.04824 13.41560
#> gene_49 13.29252 13.44023 13.25979 13.24682 13.66249 13.28016 13.21730
#> gene_50 13.24946 13.29110 13.33087 13.50732 13.49812 13.26580 13.30564
#> gene_51 13.15927 13.18749 13.35834 13.32006 13.24008 13.09770 13.30564
#> gene_52 13.40145 13.46576 13.25979 13.33428 13.22513 13.08140 13.53005
#> gene_53 13.33434 13.40106 13.41178 13.41673 13.34059 13.34986 13.00502
#> gene_54 13.18996 13.36080 13.25979 13.62761 13.21002 13.39012 13.10688
#> gene_55 13.34801 12.99047 13.05672 12.96567 13.39504 13.26580 13.40231
#> gene_56 13.46557 13.27674 13.42483 13.00174 13.13203 13.01429 13.33393
#> gene_57 13.34801 13.36080 13.08988 13.32006 13.22513 13.45482 13.48030
#> gene_58 13.27831 13.29110 13.33087 13.16966 13.39504 13.39012 13.30564
#> gene_59 13.24946 13.42729 13.50078 13.20102 13.31258 13.16112 13.34787
#> gene_60 13.52697 13.66628 13.30285 13.37609 13.52278 13.37682 13.24735
#> gene_61 13.40145 13.45305 13.42483 13.05420 13.22513 13.54079 13.10688
#> gene_62 13.09585 13.10864 13.12230 13.36229 13.40833 13.28016 13.23240
#> gene_63 13.20507 13.36080 13.31693 13.16966 13.40833 13.40329 13.23240
#> gene_64 13.23481 13.14070 13.30285 13.32006 13.44750 13.14552 13.02250
#> gene_65 13.18996 13.37435 13.37189 13.23172 13.09961 13.26580 13.37534
#> gene_66 13.27831 13.57538 13.58460 13.48202 13.35440 13.30844 13.05685
#> gene_67 13.17470 13.15646 13.30285 13.16966 13.38162 13.29437 13.48030
#> gene_68 13.30660 13.31939 13.24514 13.48202 13.13203 13.45482 13.38889
#> gene_69 13.49044 13.37435 13.38531 13.44320 13.09961 13.28016 13.60160
#> gene_70 13.12791 13.29110 13.33087 13.34835 13.26952 13.30844 13.29129
#> gene_71 13.20507 13.52768 13.18503 13.29121 13.39504 13.63314 13.27679
#> gene_72 13.40145 13.24760 13.16960 12.96567 13.13203 13.33619 13.50539
#> gene_73 13.27831 13.27674 13.65277 13.29121 13.21002 13.46742 13.53005
#> gene_74 13.17470 13.27674 13.27429 13.29121 13.03250 13.30844 13.29129
#> gene_75 13.40145 13.36080 13.48839 13.37609 13.13203 13.41635 13.41560
#> gene_76 13.45297 13.12476 13.39860 13.34835 13.39504 13.32238 13.34787
#> gene_77 13.24946 13.26225 13.61909 13.15372 13.24008 13.32238 13.33393
#> gene_78 13.30660 13.40106 13.18503 13.41673 13.28402 13.37682 13.30564
#> gene_79 13.24946 13.17206 13.30285 13.27657 13.08312 13.26580 13.27679
#> gene_80 13.40145 13.27674 13.27429 13.13760 13.25487 13.40329 13.00502
#> gene_81 13.09585 13.18749 13.56114 13.24682 13.14797 13.12976 13.12318
#> gene_82 13.52697 13.21786 13.38531 13.03692 13.54703 13.36340 13.13930
#> gene_83 13.14367 13.23281 13.38531 13.30571 13.21002 12.85081 13.46759
#> gene_84 13.57427 13.29110 13.41178 13.38977 13.16373 13.55266 13.20203
#> gene_85 13.34801 13.20275 13.24514 13.29121 13.11591 13.42929 13.29129
#> gene_86 13.11197 13.15646 13.27429 13.29121 13.08312 13.32238 13.57814
#> gene_87 13.07955 13.26225 13.16960 13.26177 13.16373 13.29437 13.24735
#> gene_88 13.27831 13.18749 13.18503 13.45625 13.35440 13.42929 13.17101
#> gene_89 13.27831 13.21786 13.30285 12.96567 13.09961 13.06491 13.33393
#> gene_90 13.20507 13.36080 13.46330 13.20102 13.31258 13.26580 13.31985
#> gene_91 13.15927 13.36080 13.39860 12.85173 12.88813 13.59920 13.13930
#> gene_92 13.23481 13.37435 13.39860 13.30571 13.25487 13.52881 13.31985
#> gene_93 13.30660 13.34713 13.18503 13.38977 13.14797 13.39012 13.20203
#> gene_94 13.29252 13.45305 13.28864 13.27657 13.17933 13.22186 13.21730
#> gene_95 13.29252 13.37435 13.16960 13.21645 13.28402 13.03136 13.20203
#> gene_96 13.44026 13.26225 13.37189 13.08814 13.32666 13.26580 13.44183
#> gene_97 13.23481 13.15646 13.25979 13.30571 13.04958 13.14552 13.21730
#> gene_98 13.32053 13.41424 13.18503 13.23172 13.13203 13.29437 13.07372
#> gene_99 13.38827 13.20275 13.31693 13.23172 13.38162 13.34986 13.34787
#> gene_100 13.07955 13.38777 13.10618 13.66182 13.09961 13.54079 13.15524
#> sample_8 sample_9 sample_10 sample_11 sample_12 sample_13 sample_14
#> gene_1 13.39898 13.27618 13.35675 13.37846 13.47280 12.93438 13.19046
#> gene_2 12.78061 13.37284 13.38371 13.20339 13.01499 13.61469 13.23578
#> gene_3 13.15438 13.26182 13.15241 13.39213 13.43433 13.02401 13.48134
#> gene_4 13.26016 12.99304 13.18344 13.21882 13.39480 13.14081 13.35010
#> gene_5 13.41215 13.12578 13.32927 13.15609 13.26928 13.24885 13.43027
#> gene_6 13.33124 13.41237 13.25820 13.30808 13.34036 13.62619 13.20573
#> gene_7 13.12267 13.15714 13.10459 13.12367 13.57063 13.12469 13.36378
#> gene_8 13.48877 13.04426 13.07180 13.29358 13.11567 13.34937 13.27972
#> gene_9 13.26016 13.30446 13.42324 13.47156 13.65112 13.18811 13.23578
#> gene_10 13.33124 13.07742 13.15241 13.27894 13.53472 13.04128 13.25058
#> gene_11 13.34504 13.10984 13.31533 13.48438 13.04934 13.51928 13.06215
#> gene_12 13.35872 13.34588 13.16801 13.45862 13.17909 13.00652 13.39074
#> gene_13 13.13861 13.50059 13.13665 13.32243 13.35416 13.36318 13.35010
#> gene_14 13.30323 13.21788 13.22875 13.43239 13.19452 13.34937 13.51849
#> gene_15 13.21577 13.41237 13.46171 13.00411 13.34036 13.29279 13.33630
#> gene_16 13.35872 13.52483 13.38371 13.29358 13.34036 13.30715 13.26522
#> gene_17 13.05709 13.46344 13.21381 13.17203 13.26928 13.26365 13.19046
#> gene_18 13.30323 13.31840 13.12071 13.30808 13.03227 13.17251 13.26522
#> gene_19 13.21577 13.37284 13.49918 13.43239 13.49788 13.37685 13.54273
#> gene_20 13.10656 13.38614 13.22875 13.26414 13.06621 13.37685 13.19046
#> gene_21 13.23072 13.20294 13.16801 13.50969 13.14773 13.15675 13.35010
#> gene_22 13.09026 13.14154 13.07180 13.15609 13.22489 13.18811 13.15944
#> gene_23 13.23072 13.15714 13.46171 13.37846 13.20979 13.02401 13.11162
#> gene_24 13.09026 13.20294 13.43618 13.21882 13.35416 13.18811 13.29408
#> gene_25 13.33124 13.30446 13.34308 13.47156 12.94374 13.45628 13.19046
#> gene_26 13.28902 13.35942 13.08829 13.37846 13.36784 13.34937 13.29408
#> gene_27 13.37226 13.15714 13.30126 13.21882 13.17909 13.30715 13.33630
#> gene_28 13.27466 13.07742 13.31533 13.24919 13.31235 13.14081 13.20573
#> gene_29 13.26016 12.97555 13.15241 13.32243 13.09937 13.27829 13.40404
#> gene_30 13.37226 12.93993 13.21381 13.30808 13.25464 13.32136 13.41721
#> gene_31 13.10656 13.26182 13.21381 13.21882 13.29813 13.12469 13.12774
#> gene_32 13.33124 13.33221 13.13665 13.10719 13.25464 13.41711 13.14367
#> gene_33 13.13861 13.26182 13.30126 13.23409 13.31235 13.34937 13.25058
#> gene_34 13.28902 13.24733 13.30126 13.07364 13.58241 13.05835 13.17504
#> gene_35 13.10656 13.42531 13.41018 13.55902 13.39480 13.05835 13.32236
#> gene_36 13.34504 13.23268 13.49918 13.41910 13.17909 13.37685 13.15944
#> gene_37 13.43814 12.90341 13.13665 13.23409 13.46009 12.91577 13.55470
#> gene_38 13.38568 13.50059 12.95080 13.41910 13.42127 13.51928 13.19046
#> gene_39 13.31730 13.23268 13.22875 13.47156 13.23984 13.40381 13.49383
#> gene_40 13.27466 13.39931 13.27269 13.20339 13.38138 13.49441 13.15944
#> gene_41 13.26016 13.34588 13.05513 13.32243 13.36784 13.32136 13.36378
#> gene_42 13.16997 13.17257 13.37029 13.36466 13.14773 13.33543 13.44321
#> gene_43 13.13861 13.10984 13.30126 13.62998 13.09937 13.55580 12.93969
#> gene_44 13.24552 13.48831 13.48680 13.32243 13.22489 13.36318 13.60162
#> gene_45 13.18540 13.50059 13.25820 13.40568 13.01499 13.26365 13.06215
#> gene_46 13.26016 13.47593 13.35675 13.35072 13.29813 13.37685 13.45603
#> gene_47 13.16997 13.46344 13.35675 13.29358 13.48539 13.29279 13.33630
#> gene_48 13.24552 13.23268 13.32927 13.24919 13.25464 13.34937 13.27972
#> gene_49 13.26016 13.57213 13.16801 13.10719 13.11567 13.33543 13.02821
#> gene_50 13.51343 13.09372 13.30126 13.49709 13.36784 13.36318 13.27972
#> gene_51 13.31730 13.27618 13.12071 13.41910 13.67331 13.39039 12.84537
#> gene_52 13.09026 13.27618 13.31533 12.98619 13.35416 13.09190 13.41721
#> gene_53 13.34504 13.42531 13.41018 13.13997 13.44726 13.37685 13.33630
#> gene_54 13.35872 13.33221 13.43618 13.02181 13.20979 13.36318 13.15944
#> gene_55 13.18540 13.12578 13.25820 13.43239 13.17909 13.21880 13.32236
#> gene_56 13.05709 13.35942 13.35675 13.62998 13.13179 13.51928 13.55470
#> gene_57 13.37226 13.39931 13.27269 13.39213 13.23984 13.23391 13.26522
#> gene_58 13.26016 13.29039 13.28705 13.17203 13.22489 13.20353 13.41721
#> gene_59 13.26016 13.51276 13.48680 13.33664 13.38138 13.30715 13.23578
#> gene_60 13.51343 13.31840 13.51146 13.49709 13.40810 13.21880 13.26522
#> gene_61 13.28902 13.35942 13.05513 13.18780 13.01499 13.29279 13.29408
#> gene_62 13.24552 13.27618 13.13665 13.41910 13.42127 13.04128 13.48134
#> gene_63 13.38568 13.26182 13.18344 13.37846 13.38138 13.30715 13.15944
#> gene_64 13.30323 13.17257 13.24355 13.13997 13.13179 13.34937 13.20573
#> gene_65 13.33124 13.30446 13.00391 13.21882 13.35416 13.00652 13.23578
#> gene_66 13.42521 13.18783 13.27269 12.98619 13.53472 13.49441 13.49383
#> gene_67 13.41215 13.29039 13.57132 13.26414 13.20979 13.40381 13.33630
#> gene_68 13.46368 13.24733 13.05513 13.37846 13.53472 13.55580 13.30829
#> gene_69 13.30323 13.29039 13.28705 13.27894 13.23984 13.59142 13.32236
#> gene_70 13.31730 13.15714 13.31533 13.47156 13.40810 13.05835 13.33630
#> gene_71 13.02315 13.33221 13.19870 13.33664 13.20979 13.21880 13.39074
#> gene_72 13.27466 13.56045 13.21381 13.30808 13.26928 13.24885 13.15944
#> gene_73 13.26016 13.12578 13.41018 13.21882 13.39480 13.21880 13.54273
#> gene_74 13.07377 13.10984 13.46171 13.26414 13.19452 13.32136 13.51849
#> gene_75 13.15438 13.41237 13.10459 13.41910 12.94374 13.18811 13.19046
#> gene_76 13.50115 13.35942 13.39701 13.07364 13.19452 13.14081 13.54273
#> gene_77 13.13861 13.15714 13.31533 13.39213 13.31235 13.27829 13.14367
#> gene_78 13.26016 13.26182 13.28705 13.23409 13.19452 13.14081 13.23578
#> gene_79 13.12267 13.12578 13.22875 13.20339 13.16350 13.24885 13.17504
#> gene_80 13.35872 13.29039 13.03825 13.27894 13.39480 13.24885 13.29408
#> gene_81 13.42521 13.33221 13.41018 13.37846 13.26928 13.36318 12.97575
#> gene_82 13.35872 13.33221 13.44900 13.09051 13.32642 13.39039 13.26522
#> gene_83 13.52560 13.51276 13.16801 13.20339 13.09937 13.17251 13.40404
#> gene_84 13.20067 13.35942 13.46171 12.93105 13.19452 13.36318 13.40404
#> gene_85 13.07377 13.34588 13.25820 13.15609 13.34036 13.49441 13.20573
#> gene_86 13.34504 13.21788 13.57132 13.18780 13.35416 13.29279 13.33630
#> gene_87 13.50115 13.24733 13.34308 13.20339 13.31235 13.15675 13.36378
#> gene_88 12.97069 13.23268 13.54767 13.10719 13.35416 13.17251 13.35010
#> gene_89 13.45097 13.29039 13.43618 13.35072 13.47280 13.24885 13.44321
#> gene_90 13.42521 13.21788 13.19870 13.12367 13.47280 13.30715 13.44321
#> gene_91 13.50115 13.12578 13.25820 13.18780 13.28378 13.23391 13.20573
#> gene_92 12.91625 13.31840 13.03825 13.37846 13.35416 13.32136 13.26522
#> gene_93 13.21577 13.50059 13.39701 13.15609 13.25464 13.14081 12.88384
#> gene_94 13.05709 13.27618 12.96872 13.64147 13.14773 13.26365 13.25058
#> gene_95 13.13861 13.39931 13.31533 13.15609 13.14773 13.39039 13.06215
#> gene_96 13.12267 13.38614 13.42324 13.26414 13.03227 13.27829 13.54273
#> gene_97 13.34504 13.54868 13.41018 13.21882 13.09937 13.18811 13.25058
#> gene_98 13.51343 13.45084 13.35675 13.20339 13.31235 13.27829 13.22083
#> gene_99 13.37226 13.38614 13.21381 13.13997 13.06621 13.27829 13.43027
#> gene_100 13.27466 13.33221 12.73743 13.24919 13.04934 13.27829 13.07883
#> sample_15 sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1 13.22376 13.33338 13.15158 13.40019 13.10417 13.40224
#> gene_2 13.49676 13.31958 13.31619 13.37322 13.01979 13.47954
#> gene_3 13.32529 12.94111 13.31619 13.26002 13.05414 13.52886
#> gene_4 13.28265 13.23386 13.50173 13.15312 13.12047 13.24878
#> gene_5 12.97868 13.30564 13.46393 13.31773 13.41289 13.37552
#> gene_6 13.56951 13.36060 13.41194 13.05473 13.12047 13.30649
#> gene_7 13.33923 13.40049 13.41194 13.24523 13.51506 13.38894
#> gene_8 13.16237 13.24850 13.25848 13.24523 13.21458 13.02641
#> gene_9 13.39367 13.30564 13.59794 13.21517 13.16830 13.33450
#> gene_10 13.09825 13.57331 13.33026 13.12106 13.18389 13.27792
#> gene_11 13.26815 13.21906 13.13564 13.27467 13.35896 13.10982
#> gene_12 13.32529 13.45202 13.25848 13.19991 12.93016 13.36198
#> gene_13 13.53359 13.26300 13.01884 13.19991 13.25943 12.99165
#> gene_14 13.22376 13.36060 13.35801 13.42666 13.27408 13.07703
#> gene_15 12.97868 13.30564 13.21363 13.42666 13.22969 13.36198
#> gene_16 13.22376 13.40049 13.25848 13.42666 13.30293 13.27792
#> gene_17 13.23871 13.27735 13.31619 13.54011 13.43912 13.45423
#> gene_18 13.44613 13.29157 13.24368 13.34575 13.27408 13.30649
#> gene_19 13.26815 13.18901 12.92921 13.28917 13.43912 13.41541
#> gene_20 13.39367 13.24850 13.43817 13.34575 13.43912 13.37552
#> gene_21 13.25351 13.37402 13.59794 13.31773 13.08769 13.27792
#> gene_22 13.31122 13.21906 13.52639 13.42666 13.19932 12.91951
#> gene_23 13.43320 12.95903 13.28762 13.33181 13.35896 13.29228
#> gene_24 13.42014 13.38732 13.41194 13.15312 13.31714 13.18867
#> gene_25 13.20866 13.43931 13.27312 13.46547 13.03707 13.46694
#> gene_26 13.48427 13.34706 13.33026 13.26002 13.24464 13.14188
#> gene_27 13.08176 13.38732 13.07006 12.83519 13.12047 13.37552
#> gene_28 13.19339 13.20411 13.35801 13.15312 12.91155 13.41541
#> gene_29 13.28265 13.36060 13.15158 13.21517 13.19932 13.07703
#> gene_30 13.14660 13.34706 13.25848 13.37322 13.38618 13.18867
#> gene_31 13.44613 13.38732 13.11952 13.43971 13.08769 13.18867
#> gene_32 13.22376 13.54986 13.27312 12.96728 13.31714 13.10982
#> gene_33 13.43320 13.14272 13.30198 13.21517 13.30293 13.18867
#> gene_34 13.32529 13.36060 12.96573 13.37322 13.34516 13.32056
#> gene_35 13.33923 13.43931 13.15158 13.28917 13.31714 13.27792
#> gene_36 13.38025 13.20411 13.48924 13.10476 13.28858 13.36198
#> gene_37 13.32529 13.21906 13.15158 13.31773 13.28858 13.37552
#> gene_38 13.36671 13.23386 13.27312 13.37322 13.16830 13.18867
#> gene_39 13.58128 13.21906 12.89174 13.19991 13.34516 13.46694
#> gene_40 13.13066 13.31958 13.07006 13.41348 13.16830 13.42847
#> gene_41 13.35303 13.51394 13.19836 13.30352 13.35896 13.38894
#> gene_42 13.19339 13.11101 13.08673 13.45265 13.21458 13.21904
#> gene_43 13.13066 13.30564 13.16734 13.43971 13.24464 13.33450
#> gene_44 13.38025 13.38732 13.41194 12.93075 13.28858 12.95603
#> gene_45 13.40697 13.14272 13.28762 13.02038 13.30293 13.40224
#> gene_46 13.32529 13.27735 13.16734 13.24523 13.50268 13.34831
#> gene_47 13.45896 13.42648 13.48924 13.07160 13.41289 13.38894
#> gene_48 13.28265 13.51394 13.30198 13.15312 13.13659 13.44141
#> gene_49 13.20866 13.27735 13.41194 13.46547 13.18389 13.18867
#> gene_50 12.99638 13.20411 13.39864 13.18448 13.24464 13.42847
#> gene_51 13.11455 13.27735 13.37168 13.19991 13.41289 13.30649
#> gene_52 13.04821 13.30564 13.33026 13.56415 13.25943 13.17324
#> gene_53 13.32529 13.12695 13.15158 13.26002 13.19932 13.36198
#> gene_54 13.29701 13.53798 13.08673 13.28917 13.43912 13.33450
#> gene_55 13.04821 13.20411 13.39864 13.28917 13.42607 13.36198
#> gene_56 13.35303 13.41355 13.47664 12.94913 13.50268 13.18867
#> gene_57 13.32529 13.02856 13.13564 13.33181 13.24464 13.34831
#> gene_58 13.23871 13.33338 13.57448 13.33181 13.51506 13.06036
#> gene_59 12.74738 13.11101 13.28762 13.26002 13.13659 13.21904
#> gene_60 13.28265 13.23386 13.16734 13.30352 13.10417 13.36198
#> gene_61 13.28265 13.14272 13.24368 13.13718 13.12047 13.06036
#> gene_62 13.44613 13.26300 13.18294 13.34575 13.25943 13.17324
#> gene_63 13.31122 13.34706 13.50173 13.16889 13.43912 13.14188
#> gene_64 13.31122 13.29157 13.16734 13.40019 13.41289 13.04348
#> gene_65 13.19339 13.46462 13.42511 13.46547 13.15253 13.37552
#> gene_66 13.25351 13.26300 13.30198 13.18448 13.39960 13.45423
#> gene_67 13.42014 13.12695 13.19836 13.05473 13.33122 13.15764
#> gene_68 13.04821 13.40049 13.34420 13.24523 13.53952 13.42847
#> gene_69 13.36671 13.27735 13.30198 13.30352 13.25943 13.29228
#> gene_70 13.50914 13.11101 13.22874 13.12106 13.15253 13.37552
#> gene_71 13.42014 13.24850 13.13564 13.40019 13.37263 13.24878
#> gene_72 13.19339 13.30564 13.13564 13.30352 13.43912 13.33450
#> gene_73 13.28265 13.21906 13.52639 12.81529 13.47759 13.00914
#> gene_74 13.38025 13.17374 13.22874 13.05473 13.61048 13.10982
#> gene_75 13.14660 13.41355 13.30198 13.28917 13.15253 13.18867
#> gene_76 13.45896 13.17374 13.18294 13.27467 13.30293 13.23398
#> gene_77 13.01386 13.33338 13.13564 13.33181 13.18389 13.29228
#> gene_78 13.31122 13.29157 13.24368 13.47818 13.25943 13.59982
#> gene_79 13.14660 13.21906 13.46393 13.31773 13.18389 13.18867
#> gene_80 13.08176 13.27735 13.28762 13.24523 13.46488 13.29228
#> gene_81 13.20866 13.20411 13.30198 13.23028 13.27408 13.20393
#> gene_82 13.19339 13.14272 13.45111 13.23028 13.15253 13.27792
#> gene_83 13.11455 13.21906 13.19836 13.41348 13.37263 13.33450
#> gene_84 13.22376 13.23386 13.31619 13.13718 12.96669 13.45423
#> gene_85 13.28265 13.15831 13.38522 13.49078 13.30293 13.44141
#> gene_86 13.26815 13.60780 13.41194 13.23028 13.27408 13.23398
#> gene_87 13.43320 13.06211 12.91060 13.31773 13.71077 13.20393
#> gene_88 13.26815 13.06211 13.45111 13.35955 13.38618 13.26343
#> gene_89 13.26815 12.88598 13.27312 13.45265 13.35896 13.52886
#> gene_90 13.33923 13.52601 13.08673 13.24523 13.31714 13.30649
#> gene_91 13.01386 13.23386 13.39864 13.33181 13.08769 13.41541
#> gene_92 13.35303 13.40049 13.43817 13.28917 13.39960 13.40224
#> gene_93 13.29701 13.30564 13.07006 13.34575 13.33122 12.99165
#> gene_94 13.29701 13.20411 13.48924 13.45265 13.30293 13.20393
#> gene_95 13.31122 13.37402 13.18294 13.12106 13.39960 13.23398
#> gene_96 13.48427 13.20411 13.34420 13.08828 13.35896 13.41541
#> gene_97 13.45896 13.24850 13.22874 13.30352 13.39960 13.21904
#> gene_98 13.29701 13.42648 13.52639 13.35955 13.07101 13.36198
#> gene_99 13.28265 13.09490 13.31619 13.16889 13.35896 13.38894
#> gene_100 13.29701 13.41355 13.11952 13.43971 13.39960 13.40224
#>