Package index • Rtoolset

Sample Operations

Functions that operate on samples/observations. See the Sample partition vignette.

balanced_partition(): Balanced partition of samples into groups using one numeric column (mean + SD)
balance_partition_core(): Core optimizer: assign samples to groups to balance mean + SD (Gini loss)

Functions that operate on features/genes/variables. See the RNA-seq Workflow vignette.

get_top_var_mat(): get the the var_gene_list and topN (or top percent) most variable genes
filter_calcpm_dge(): filter countData by gene expression, perform cpm and log2(cpm+1) transformation

Functions that transform entire matrices/dataframes. See the RNA-seq and DNA Methylation vignettes.

Helper functions for common tasks. See the Utilities Guide vignette.

closestMatch(): find the closest match of a string in a vector of strings
print_pval(): print p-values in a more readable format
vec2print(): print a vector in a copy-paste friendly format
mkdir(): create a directory if it does not exist
save2pdf(): save a plot to a PDF file
extract_params(): extract and assign default function arguments to the global environment
createNamedList(): Create a named list
install_packages(): Install packages from CRAN, Bioconductor, or GitHub
check_packages(): Check which packages are not installed

Games and visualizations. See the Visualization vignette.

play_2048(): Play the 2048 game in the R console
draw_heart(): Draw a 2D heart shape image
draw_heart_step(): Convert heart image to LEGO mosaic and extract build steps
draw_heart_gif(): Create a LEGO-style animated heart GIF
draw_xmas_tree_gif(): Make an animated Christmas tree (gganimate GIF)
draw_xmas_tree_gif_panel(): Create a panel GIF from multiple style GIFs