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perform log transformation with psuedo count

Usage

log_transform(df_mat, count = 1, base = 2)

Arguments

df_mat

data.frame or matrix

count

psuedo count, default is 1

base

base of the log transformation, default is 2

Value

a log transformed data.frame

Examples


log_transform(count_df)
#>          sample_1 sample_2 sample_3 sample_4 sample_5 sample_6 sample_7
#> gene_1   6.794416 6.754888 6.507795 6.643856 6.820179 6.426265 6.523562
#> gene_2   6.714246 6.807355 6.629357 6.781360 6.781360 6.942515 6.930737
#> gene_3   6.686501 6.807355 6.507795 6.781360 6.894818 6.845490 6.672425
#> gene_4   6.475733 6.554589 6.700440 6.643856 6.599913 6.285402 6.629357
#> gene_5   6.807355 6.727920 6.539159 6.700440 6.781360 6.714246 6.584963
#> gene_6   6.554589 6.459432 6.857981 6.507795 6.942515 6.599913 6.539159
#> gene_7   6.584963 6.643856 6.339850 6.554589 6.554589 6.794416 6.727920
#> gene_8   6.459432 6.781360 6.614710 6.629357 6.686501 6.658211 6.643856
#> gene_9   6.409391 6.584963 6.700440 6.523562 6.658211 6.686501 6.392317
#> gene_10  6.794416 6.523562 6.584963 6.781360 6.672425 6.539159 6.672425
#> gene_11  6.700440 6.459432 6.794416 6.700440 6.672425 6.629357 6.754888
#> gene_12  6.475733 6.629357 6.409391 6.539159 6.491853 6.727920 6.569856
#> gene_13  6.599913 6.539159 6.523562 6.584963 6.727920 6.658211 6.442943
#> gene_14  6.459432 6.741467 6.807355 6.569856 6.459432 6.741467 6.599913
#> gene_15  6.523562 6.569856 6.491853 6.357552 6.727920 6.599913 6.714246
#> gene_16  6.686501 6.643856 6.442943 6.459432 6.942515 6.686501 6.954196
#> gene_17  6.629357 6.554589 6.845490 6.741467 6.700440 6.643856 6.569856
#> gene_18  6.768184 6.569856 7.022368 6.629357 6.686501 6.523562 6.727920
#> gene_19  6.954196 6.569856 6.554589 6.554589 6.781360 6.882643 6.375039
#> gene_20  6.781360 6.672425 6.599913 6.539159 6.658211 6.569856 6.599913
#> gene_21  6.845490 6.339850 6.741467 6.658211 6.700440 6.727920 6.554589
#> gene_22  6.629357 6.820179 6.442943 6.820179 6.754888 6.475733 6.392317
#> gene_23  6.882643 6.700440 6.409391 6.857981 6.658211 6.584963 6.686501
#> gene_24  6.539159 6.832890 6.409391 6.599913 6.569856 6.459432 6.569856
#> gene_25  6.426265 6.686501 6.658211 6.569856 6.554589 6.554589 6.475733
#> gene_26  6.714246 6.643856 6.741467 6.658211 6.569856 6.523562 6.700440
#> gene_27  6.882643 6.658211 6.614710 6.523562 6.781360 6.643856 6.599913
#> gene_28  6.523562 6.700440 6.643856 6.727920 6.714246 6.727920 6.392317
#> gene_29  6.794416 6.700440 6.754888 6.965784 6.882643 6.491853 6.845490
#> gene_30  6.523562 6.658211 6.643856 6.629357 7.011227 6.643856 6.727920
#> gene_31  6.599913 6.768184 6.794416 6.539159 6.700440 6.686501 6.894818
#> gene_32  6.768184 6.857981 6.832890 6.507795 6.832890 6.781360 6.768184
#> gene_33  6.507795 6.599913 6.658211 6.906891 6.539159 6.672425 6.700440
#> gene_34  6.727920 6.409391 6.569856 6.629357 6.672425 6.754888 6.714246
#> gene_35  6.658211 6.754888 6.768184 6.768184 6.727920 6.491853 6.754888
#> gene_36  6.491853 6.832890 6.554589 6.807355 6.491853 6.491853 6.794416
#> gene_37  6.700440 6.700440 6.643856 6.569856 6.700440 6.491853 6.554589
#> gene_38  6.794416 6.870365 6.584963 6.686501 6.754888 6.781360 6.781360
#> gene_39  6.954196 6.584963 7.022368 6.614710 6.523562 6.554589 6.523562
#> gene_40  6.845490 6.754888 6.599913 6.807355 6.658211 6.554589 6.686501
#> gene_41  6.569856 6.375039 6.357552 6.629357 6.584963 6.507795 6.614710
#> gene_42  6.918863 6.727920 6.930737 6.442943 6.569856 6.599913 6.629357
#> gene_43  6.247928 6.781360 6.686501 6.426265 6.614710 6.554589 6.569856
#> gene_44  6.599913 6.459432 6.629357 6.491853 6.643856 6.781360 6.539159
#> gene_45  6.599913 6.629357 6.357552 6.539159 6.672425 6.539159 6.584963
#> gene_46  6.409391 6.686501 6.507795 6.768184 6.781360 6.686501 6.714246
#> gene_47  6.832890 6.599913 6.714246 6.554589 6.686501 6.741467 6.754888
#> gene_48  6.832890 6.741467 6.584963 6.643856 6.781360 6.442943 6.781360
#> gene_49  6.686501 6.820179 6.643856 6.599913 7.033423 6.672425 6.584963
#> gene_50  6.643856 6.672425 6.714246 6.857981 6.870365 6.658211 6.672425
#> gene_51  6.554589 6.569856 6.741467 6.672425 6.614710 6.491853 6.672425
#> gene_52  6.794416 6.845490 6.643856 6.686501 6.599913 6.475733 6.894818
#> gene_53  6.727920 6.781360 6.794416 6.768184 6.714246 6.741467 6.375039
#> gene_54  6.584963 6.741467 6.643856 6.977280 6.584963 6.781360 6.475733
#> gene_55  6.741467 6.375039 6.442943 6.321928 6.768184 6.658211 6.768184
#> gene_56  6.857981 6.658211 6.807355 6.357552 6.507795 6.409391 6.700440
#> gene_57  6.741467 6.741467 6.475733 6.672425 6.599913 6.845490 6.845490
#> gene_58  6.672425 6.672425 6.714246 6.523562 6.768184 6.781360 6.672425
#> gene_59  6.643856 6.807355 6.882643 6.554589 6.686501 6.554589 6.714246
#> gene_60  6.918863 7.044394 6.686501 6.727920 6.894818 6.768184 6.614710
#> gene_61  6.794416 6.832890 6.807355 6.409391 6.599913 6.930737 6.475733
#> gene_62  6.491853 6.491853 6.507795 6.714246 6.781360 6.672425 6.599913
#> gene_63  6.599913 6.741467 6.700440 6.523562 6.781360 6.794416 6.599913
#> gene_64  6.629357 6.523562 6.686501 6.672425 6.820179 6.539159 6.392317
#> gene_65  6.584963 6.754888 6.754888 6.584963 6.475733 6.658211 6.741467
#> gene_66  6.672425 6.954196 6.965784 6.832890 6.727920 6.700440 6.426265
#> gene_67  6.569856 6.539159 6.686501 6.523562 6.754888 6.686501 6.845490
#> gene_68  6.700440 6.700440 6.629357 6.832890 6.507795 6.845490 6.754888
#> gene_69  6.882643 6.754888 6.768184 6.794416 6.475733 6.672425 6.965784
#> gene_70  6.523562 6.672425 6.714246 6.700440 6.643856 6.700440 6.658211
#> gene_71  6.599913 6.906891 6.569856 6.643856 6.768184 7.022368 6.643856
#> gene_72  6.794416 6.629357 6.554589 6.321928 6.507795 6.727920 6.870365
#> gene_73  6.672425 6.658211 7.033423 6.643856 6.584963 6.857981 6.894818
#> gene_74  6.569856 6.658211 6.658211 6.643856 6.409391 6.700440 6.658211
#> gene_75  6.794416 6.741467 6.870365 6.727920 6.507795 6.807355 6.781360
#> gene_76  6.845490 6.507795 6.781360 6.700440 6.768184 6.714246 6.714246
#> gene_77  6.643856 6.643856 7.000000 6.507795 6.614710 6.714246 6.700440
#> gene_78  6.700440 6.781360 6.569856 6.768184 6.658211 6.768184 6.672425
#> gene_79  6.643856 6.554589 6.686501 6.629357 6.459432 6.658211 6.643856
#> gene_80  6.794416 6.658211 6.658211 6.491853 6.629357 6.794416 6.375039
#> gene_81  6.491853 6.569856 6.942515 6.599913 6.523562 6.523562 6.491853
#> gene_82  6.918863 6.599913 6.768184 6.392317 6.918863 6.754888 6.507795
#> gene_83  6.539159 6.614710 6.768184 6.658211 6.584963 6.247928 6.832890
#> gene_84  6.965784 6.672425 6.794416 6.741467 6.539159 6.942515 6.569856
#> gene_85  6.741467 6.584963 6.629357 6.643856 6.491853 6.820179 6.658211
#> gene_86  6.507795 6.539159 6.658211 6.643856 6.459432 6.714246 6.942515
#> gene_87  6.475733 6.643856 6.554589 6.614710 6.539159 6.686501 6.614710
#> gene_88  6.672425 6.569856 6.569856 6.807355 6.727920 6.820179 6.539159
#> gene_89  6.672425 6.599913 6.686501 6.321928 6.475733 6.459432 6.700440
#> gene_90  6.599913 6.741467 6.845490 6.554589 6.686501 6.658211 6.686501
#> gene_91  6.554589 6.741467 6.781360 6.209453 6.266787 6.988685 6.507795
#> gene_92  6.629357 6.754888 6.781360 6.658211 6.629357 6.918863 6.686501
#> gene_93  6.700440 6.727920 6.569856 6.741467 6.523562 6.781360 6.569856
#> gene_94  6.686501 6.832890 6.672425 6.629357 6.554589 6.614710 6.584963
#> gene_95  6.686501 6.754888 6.554589 6.569856 6.658211 6.426265 6.569856
#> gene_96  6.832890 6.643856 6.754888 6.442943 6.700440 6.658211 6.807355
#> gene_97  6.629357 6.539159 6.643856 6.658211 6.426265 6.539159 6.584963
#> gene_98  6.714246 6.794416 6.569856 6.584963 6.507795 6.686501 6.442943
#> gene_99  6.781360 6.584963 6.700440 6.584963 6.754888 6.741467 6.714246
#> gene_100 6.475733 6.768184 6.491853 7.011227 6.475733 6.930737 6.523562
#>          sample_8 sample_9 sample_10 sample_11 sample_12 sample_13 sample_14
#> gene_1   6.781360 6.672425  6.741467  6.727920  6.845490  6.303781  6.569856
#> gene_2   6.169925 6.768184  6.768184  6.554589  6.392317  6.977280  6.614710
#> gene_3   6.539159 6.658211  6.539159  6.741467  6.807355  6.392317  6.857981
#> gene_4   6.643856 6.392317  6.569856  6.569856  6.768184  6.507795  6.727920
#> gene_5   6.794416 6.523562  6.714246  6.507795  6.643856  6.614710  6.807355
#> gene_6   6.714246 6.807355  6.643856  6.658211  6.714246  6.988685  6.584963
#> gene_7   6.507795 6.554589  6.491853  6.475733  6.942515  6.491853  6.741467
#> gene_8   6.870365 6.442943  6.459432  6.643856  6.491853  6.714246  6.658211
#> gene_9   6.643856 6.700440  6.807355  6.820179  7.022368  6.554589  6.614710
#> gene_10  6.714246 6.475733  6.539159  6.629357  6.906891  6.409391  6.629357
#> gene_11  6.727920 6.507795  6.700440  6.832890  6.426265  6.882643  6.442943
#> gene_12  6.741467 6.741467  6.554589  6.807355  6.554589  6.375039  6.768184
#> gene_13  6.523562 6.894818  6.523562  6.672425  6.727920  6.727920  6.727920
#> gene_14  6.686501 6.614710  6.614710  6.781360  6.569856  6.714246  6.894818
#> gene_15  6.599913 6.807355  6.845490  6.357552  6.714246  6.658211  6.714246
#> gene_16  6.741467 6.918863  6.768184  6.643856  6.714246  6.672425  6.643856
#> gene_17  6.442943 6.857981  6.599913  6.523562  6.643856  6.629357  6.569856
#> gene_18  6.686501 6.714246  6.507795  6.658211  6.409391  6.539159  6.643856
#> gene_19  6.599913 6.768184  6.882643  6.781360  6.870365  6.741467  6.918863
#> gene_20  6.491853 6.781360  6.614710  6.614710  6.442943  6.741467  6.569856
#> gene_21  6.614710 6.599913  6.554589  6.857981  6.523562  6.523562  6.727920
#> gene_22  6.475733 6.539159  6.459432  6.507795  6.599913  6.554589  6.539159
#> gene_23  6.614710 6.554589  6.845490  6.727920  6.584963  6.392317  6.491853
#> gene_24  6.475733 6.599913  6.820179  6.569856  6.727920  6.554589  6.672425
#> gene_25  6.714246 6.700440  6.727920  6.820179  6.321928  6.820179  6.569856
#> gene_26  6.672425 6.754888  6.475733  6.727920  6.741467  6.714246  6.672425
#> gene_27  6.754888 6.554589  6.686501  6.569856  6.554589  6.672425  6.714246
#> gene_28  6.658211 6.475733  6.700440  6.599913  6.686501  6.507795  6.584963
#> gene_29  6.643856 6.375039  6.539159  6.672425  6.475733  6.643856  6.781360
#> gene_30  6.754888 6.339850  6.599913  6.658211  6.629357  6.686501  6.794416
#> gene_31  6.491853 6.658211  6.599913  6.569856  6.672425  6.491853  6.507795
#> gene_32  6.714246 6.727920  6.523562  6.459432  6.629357  6.781360  6.523562
#> gene_33  6.523562 6.658211  6.686501  6.584963  6.686501  6.714246  6.629357
#> gene_34  6.672425 6.643856  6.686501  6.426265  6.954196  6.426265  6.554589
#> gene_35  6.491853 6.820179  6.794416  6.906891  6.768184  6.426265  6.700440
#> gene_36  6.727920 6.629357  6.882643  6.768184  6.554589  6.741467  6.539159
#> gene_37  6.820179 6.303781  6.523562  6.584963  6.832890  6.285402  6.930737
#> gene_38  6.768184 6.894818  6.339850  6.768184  6.794416  6.882643  6.569856
#> gene_39  6.700440 6.629357  6.614710  6.820179  6.614710  6.768184  6.870365
#> gene_40  6.658211 6.794416  6.658211  6.554589  6.754888  6.857981  6.539159
#> gene_41  6.643856 6.741467  6.442943  6.672425  6.741467  6.686501  6.741467
#> gene_42  6.554589 6.569856  6.754888  6.714246  6.523562  6.700440  6.820179
#> gene_43  6.523562 6.507795  6.686501  6.977280  6.475733  6.918863  6.321928
#> gene_44  6.629357 6.882643  6.870365  6.672425  6.599913  6.727920  6.977280
#> gene_45  6.569856 6.894818  6.643856  6.754888  6.392317  6.629357  6.442943
#> gene_46  6.643856 6.870365  6.741467  6.700440  6.672425  6.741467  6.832890
#> gene_47  6.554589 6.857981  6.741467  6.643856  6.857981  6.658211  6.714246
#> gene_48  6.629357 6.629357  6.714246  6.599913  6.629357  6.714246  6.658211
#> gene_49  6.643856 6.965784  6.554589  6.459432  6.491853  6.700440  6.409391
#> gene_50  6.894818 6.491853  6.686501  6.845490  6.741467  6.727920  6.658211
#> gene_51  6.700440 6.672425  6.507795  6.768184  7.044394  6.754888  6.228819
#> gene_52  6.475733 6.672425  6.700440  6.339850  6.727920  6.459432  6.794416
#> gene_53  6.727920 6.820179  6.794416  6.491853  6.820179  6.741467  6.714246
#> gene_54  6.741467 6.727920  6.820179  6.375039  6.584963  6.727920  6.539159
#> gene_55  6.569856 6.523562  6.643856  6.781360  6.554589  6.584963  6.700440
#> gene_56  6.442943 6.754888  6.741467  6.977280  6.507795  6.882643  6.930737
#> gene_57  6.754888 6.794416  6.658211  6.741467  6.614710  6.599913  6.643856
#> gene_58  6.643856 6.686501  6.672425  6.523562  6.599913  6.569856  6.794416
#> gene_59  6.643856 6.906891  6.870365  6.686501  6.754888  6.672425  6.614710
#> gene_60  6.894818 6.714246  6.894818  6.845490  6.781360  6.584963  6.643856
#> gene_61  6.672425 6.754888  6.442943  6.539159  6.392317  6.658211  6.672425
#> gene_62  6.629357 6.672425  6.523562  6.768184  6.794416  6.409391  6.857981
#> gene_63  6.768184 6.658211  6.569856  6.727920  6.754888  6.672425  6.539159
#> gene_64  6.686501 6.569856  6.629357  6.491853  6.507795  6.714246  6.584963
#> gene_65  6.714246 6.700440  6.392317  6.569856  6.727920  6.375039  6.614710
#> gene_66  6.807355 6.584963  6.658211  6.339850  6.906891  6.857981  6.870365
#> gene_67  6.794416 6.686501  6.954196  6.614710  6.584963  6.768184  6.714246
#> gene_68  6.845490 6.643856  6.442943  6.727920  6.906891  6.918863  6.686501
#> gene_69  6.686501 6.686501  6.672425  6.629357  6.614710  6.954196  6.700440
#> gene_70  6.700440 6.554589  6.700440  6.820179  6.781360  6.426265  6.714246
#> gene_71  6.409391 6.727920  6.584963  6.686501  6.584963  6.584963  6.768184
#> gene_72  6.658211 6.954196  6.599913  6.658211  6.643856  6.614710  6.539159
#> gene_73  6.643856 6.523562  6.794416  6.569856  6.768184  6.584963  6.918863
#> gene_74  6.459432 6.507795  6.845490  6.614710  6.569856  6.686501  6.894818
#> gene_75  6.539159 6.807355  6.491853  6.768184  6.321928  6.554589  6.569856
#> gene_76  6.882643 6.754888  6.781360  6.426265  6.569856  6.507795  6.918863
#> gene_77  6.523562 6.554589  6.700440  6.741467  6.686501  6.643856  6.523562
#> gene_78  6.643856 6.658211  6.672425  6.584963  6.569856  6.507795  6.614710
#> gene_79  6.507795 6.523562  6.614710  6.554589  6.539159  6.614710  6.554589
#> gene_80  6.741467 6.686501  6.426265  6.629357  6.768184  6.614710  6.672425
#> gene_81  6.807355 6.727920  6.794416  6.727920  6.643856  6.727920  6.357552
#> gene_82  6.741467 6.727920  6.832890  6.442943  6.700440  6.754888  6.643856
#> gene_83  6.906891 6.906891  6.554589  6.554589  6.475733  6.539159  6.781360
#> gene_84  6.584963 6.754888  6.845490  6.285402  6.569856  6.727920  6.781360
#> gene_85  6.459432 6.741467  6.643856  6.507795  6.714246  6.857981  6.584963
#> gene_86  6.727920 6.614710  6.954196  6.539159  6.727920  6.658211  6.714246
#> gene_87  6.882643 6.643856  6.727920  6.554589  6.686501  6.523562  6.741467
#> gene_88  6.357552 6.629357  6.930737  6.459432  6.727920  6.539159  6.727920
#> gene_89  6.832890 6.686501  6.820179  6.700440  6.845490  6.614710  6.820179
#> gene_90  6.807355 6.614710  6.584963  6.475733  6.845490  6.672425  6.820179
#> gene_91  6.882643 6.523562  6.643856  6.539159  6.658211  6.599913  6.584963
#> gene_92  6.303781 6.714246  6.426265  6.727920  6.727920  6.686501  6.643856
#> gene_93  6.599913 6.894818  6.781360  6.507795  6.629357  6.507795  6.266787
#> gene_94  6.442943 6.672425  6.357552  6.988685  6.523562  6.629357  6.629357
#> gene_95  6.523562 6.794416  6.700440  6.507795  6.523562  6.754888  6.442943
#> gene_96  6.507795 6.781360  6.807355  6.614710  6.409391  6.643856  6.918863
#> gene_97  6.727920 6.942515  6.794416  6.569856  6.475733  6.554589  6.629357
#> gene_98  6.894818 6.845490  6.741467  6.554589  6.686501  6.643856  6.599913
#> gene_99  6.754888 6.781360  6.599913  6.491853  6.442943  6.643856  6.807355
#> gene_100 6.658211 6.727920  6.129283  6.599913  6.426265  6.643856  6.459432
#>          sample_15 sample_16 sample_17 sample_18 sample_19 sample_20
#> gene_1    6.599913  6.727920  6.523562  6.768184  6.475733  6.781360
#> gene_2    6.870365  6.714246  6.686501  6.741467  6.392317  6.857981
#> gene_3    6.700440  6.339850  6.686501  6.629357  6.426265  6.906891
#> gene_4    6.658211  6.629357  6.870365  6.523562  6.491853  6.629357
#> gene_5    6.357552  6.700440  6.832890  6.686501  6.781360  6.754888
#> gene_6    6.942515  6.754888  6.781360  6.426265  6.491853  6.686501
#> gene_7    6.714246  6.794416  6.781360  6.614710  6.882643  6.768184
#> gene_8    6.539159  6.643856  6.629357  6.614710  6.584963  6.409391
#> gene_9    6.768184  6.700440  6.965784  6.584963  6.539159  6.714246
#> gene_10   6.475733  6.965784  6.700440  6.491853  6.554589  6.658211
#> gene_11   6.643856  6.614710  6.507795  6.643856  6.727920  6.491853
#> gene_12   6.700440  6.845490  6.629357  6.569856  6.303781  6.741467
#> gene_13   6.906891  6.658211  6.392317  6.569856  6.629357  6.375039
#> gene_14   6.599913  6.754888  6.727920  6.794416  6.643856  6.459432
#> gene_15   6.357552  6.700440  6.584963  6.794416  6.599913  6.741467
#> gene_16   6.599913  6.794416  6.629357  6.794416  6.672425  6.658211
#> gene_17   6.614710  6.672425  6.686501  6.906891  6.807355  6.832890
#> gene_18   6.820179  6.686501  6.614710  6.714246  6.643856  6.686501
#> gene_19   6.643856  6.584963  6.303781  6.658211  6.807355  6.794416
#> gene_20   6.768184  6.643856  6.807355  6.714246  6.807355  6.754888
#> gene_21   6.629357  6.768184  6.965784  6.686501  6.459432  6.658211
#> gene_22   6.686501  6.614710  6.894818  6.794416  6.569856  6.303781
#> gene_23   6.807355  6.357552  6.658211  6.700440  6.727920  6.672425
#> gene_24   6.794416  6.781360  6.781360  6.523562  6.686501  6.569856
#> gene_25   6.584963  6.832890  6.643856  6.832890  6.409391  6.845490
#> gene_26   6.857981  6.741467  6.700440  6.629357  6.614710  6.523562
#> gene_27   6.459432  6.781360  6.442943  6.209453  6.491853  6.754888
#> gene_28   6.569856  6.599913  6.727920  6.523562  6.285402  6.794416
#> gene_29   6.658211  6.754888  6.523562  6.584963  6.569856  6.459432
#> gene_30   6.523562  6.741467  6.629357  6.741467  6.754888  6.569856
#> gene_31   6.820179  6.781360  6.491853  6.807355  6.459432  6.569856
#> gene_32   6.599913  6.942515  6.643856  6.339850  6.686501  6.491853
#> gene_33   6.807355  6.539159  6.672425  6.584963  6.672425  6.569856
#> gene_34   6.700440  6.754888  6.339850  6.741467  6.714246  6.700440
#> gene_35   6.714246  6.832890  6.523562  6.658211  6.686501  6.658211
#> gene_36   6.754888  6.599913  6.857981  6.475733  6.658211  6.741467
#> gene_37   6.700440  6.614710  6.523562  6.686501  6.658211  6.754888
#> gene_38   6.741467  6.629357  6.643856  6.741467  6.539159  6.569856
#> gene_39   6.954196  6.614710  6.266787  6.569856  6.714246  6.845490
#> gene_40   6.507795  6.714246  6.442943  6.781360  6.539159  6.807355
#> gene_41   6.727920  6.906891  6.569856  6.672425  6.727920  6.768184
#> gene_42   6.569856  6.507795  6.459432  6.820179  6.584963  6.599913
#> gene_43   6.507795  6.700440  6.539159  6.807355  6.614710  6.714246
#> gene_44   6.754888  6.781360  6.781360  6.303781  6.658211  6.339850
#> gene_45   6.781360  6.539159  6.658211  6.392317  6.672425  6.781360
#> gene_46   6.700440  6.672425  6.539159  6.614710  6.870365  6.727920
#> gene_47   6.832890  6.820179  6.857981  6.442943  6.781360  6.768184
#> gene_48   6.658211  6.906891  6.672425  6.523562  6.507795  6.820179
#> gene_49   6.584963  6.672425  6.781360  6.832890  6.554589  6.569856
#> gene_50   6.375039  6.599913  6.768184  6.554589  6.614710  6.807355
#> gene_51   6.491853  6.672425  6.741467  6.569856  6.781360  6.686501
#> gene_52   6.426265  6.700440  6.700440  6.930737  6.629357  6.554589
#> gene_53   6.700440  6.523562  6.523562  6.629357  6.569856  6.741467
#> gene_54   6.672425  6.930737  6.459432  6.658211  6.807355  6.714246
#> gene_55   6.426265  6.599913  6.768184  6.658211  6.794416  6.741467
#> gene_56   6.727920  6.807355  6.845490  6.321928  6.870365  6.569856
#> gene_57   6.700440  6.426265  6.507795  6.700440  6.614710  6.727920
#> gene_58   6.614710  6.727920  6.942515  6.700440  6.882643  6.442943
#> gene_59   6.129283  6.507795  6.658211  6.629357  6.507795  6.599913
#> gene_60   6.658211  6.629357  6.539159  6.672425  6.475733  6.741467
#> gene_61   6.658211  6.539159  6.614710  6.507795  6.491853  6.442943
#> gene_62   6.820179  6.658211  6.554589  6.714246  6.629357  6.554589
#> gene_63   6.686501  6.741467  6.870365  6.539159  6.807355  6.523562
#> gene_64   6.686501  6.686501  6.539159  6.768184  6.781360  6.426265
#> gene_65   6.569856  6.857981  6.794416  6.832890  6.523562  6.754888
#> gene_66   6.629357  6.658211  6.672425  6.554589  6.768184  6.832890
#> gene_67   6.794416  6.523562  6.569856  6.426265  6.700440  6.539159
#> gene_68   6.426265  6.794416  6.714246  6.614710  6.906891  6.807355
#> gene_69   6.741467  6.672425  6.672425  6.672425  6.629357  6.672425
#> gene_70   6.882643  6.507795  6.599913  6.491853  6.523562  6.754888
#> gene_71   6.794416  6.643856  6.507795  6.768184  6.741467  6.629357
#> gene_72   6.569856  6.700440  6.507795  6.672425  6.807355  6.714246
#> gene_73   6.658211  6.614710  6.894818  6.189825  6.845490  6.392317
#> gene_74   6.754888  6.569856  6.599913  6.426265  6.977280  6.491853
#> gene_75   6.523562  6.807355  6.672425  6.658211  6.523562  6.569856
#> gene_76   6.832890  6.569856  6.554589  6.643856  6.672425  6.614710
#> gene_77   6.392317  6.727920  6.507795  6.700440  6.554589  6.672425
#> gene_78   6.686501  6.686501  6.614710  6.845490  6.629357  6.977280
#> gene_79   6.523562  6.614710  6.832890  6.686501  6.554589  6.569856
#> gene_80   6.459432  6.672425  6.658211  6.614710  6.832890  6.672425
#> gene_81   6.584963  6.599913  6.672425  6.599913  6.643856  6.584963
#> gene_82   6.569856  6.539159  6.820179  6.599913  6.523562  6.658211
#> gene_83   6.491853  6.614710  6.569856  6.781360  6.741467  6.714246
#> gene_84   6.599913  6.629357  6.686501  6.507795  6.339850  6.832890
#> gene_85   6.658211  6.554589  6.754888  6.857981  6.672425  6.820179
#> gene_86   6.643856  7.000000  6.781360  6.599913  6.643856  6.614710
#> gene_87   6.807355  6.459432  6.285402  6.686501  7.076816  6.584963
#> gene_88   6.643856  6.459432  6.820179  6.727920  6.754888  6.643856
#> gene_89   6.643856  6.285402  6.643856  6.820179  6.727920  6.906891
#> gene_90   6.714246  6.918863  6.459432  6.614710  6.686501  6.686501
#> gene_91   6.392317  6.629357  6.768184  6.700440  6.459432  6.794416
#> gene_92   6.727920  6.794416  6.807355  6.658211  6.768184  6.781360
#> gene_93   6.672425  6.700440  6.442943  6.714246  6.700440  6.375039
#> gene_94   6.672425  6.599913  6.857981  6.820179  6.672425  6.584963
#> gene_95   6.686501  6.768184  6.554589  6.491853  6.768184  6.614710
#> gene_96   6.857981  6.599913  6.714246  6.459432  6.727920  6.794416
#> gene_97   6.832890  6.643856  6.599913  6.672425  6.768184  6.599913
#> gene_98   6.672425  6.820179  6.894818  6.727920  6.442943  6.741467
#> gene_99   6.658211  6.491853  6.686501  6.539159  6.727920  6.768184
#> gene_100  6.672425  6.807355  6.491853  6.807355  6.768184  6.781360